Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0255
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    29   0.75 
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom...    27   2.3  
SPCC757.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   4.0  
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.3  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    25   9.2  

>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = -1

Query: 559 DIYMSVGLPTPVAGALMM 506
           DIY SV +PTP+ G+L++
Sbjct: 293 DIYASVSIPTPLGGSLLL 310


>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
           Pof7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 550 YKYLSAYPLSTCIFY 594
           Y+YL  YP STCI Y
Sbjct: 231 YRYLRLYPNSTCIVY 245


>SPCC757.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 116

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 281 YFMYTTCGITGKMRHEKPPTSVRFFGACQV 192
           Y  YT CG  G + H+K    V   G CQ+
Sbjct: 11  YCKYTCCGYVGSLDHDKQDAHVCKLG-CQL 39


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 7/54 (12%)
 Frame = -3

Query: 200 CQVSGVYMDLPSHALFSYLQ*YKR*HIYSPNRNKSL-------KKLHENDSLQI 60
           C    + +++ S  L S L+ YK+ H+ +PN N SL       ++L ++ SLQ+
Sbjct: 280 CDTQDILLNVNSQNLTSTLEKYKKMHLQNPN-NFSLDFTLSIFERLRKDSSLQL 332


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -1

Query: 559 DIYMSVGLPTPVAGALMMRIFVGMRNNNVNFKCPAKRTDGYS 434
           D   S+ L TP+ GA+ + +      NN++ K P K+ D Y+
Sbjct: 692 DSISSMALATPI-GAIRIHL---RSANNLHSKIPGKKCDSYA 729


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,620,962
Number of Sequences: 5004
Number of extensions: 53653
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)