Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0255
(640 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0332 + 16465360-16465769,16465873-16466272,16466379-164664... 29 2.4
10_08_0683 - 19860777-19861070,19861677-19861874,19862498-198626... 29 3.1
10_01_0132 - 1601421-1601657,1601761-1601922,1602812-1603721,160... 28 5.4
03_05_0902 + 28643395-28643708,28643830-28643921,28644342-286444... 28 5.4
03_01_0130 - 1007433-1007712,1007739-1007803,1007804-1008001,100... 28 5.4
08_02_0446 - 17221514-17221626,17221960-17222035,17222381-172225... 28 7.2
01_05_0749 + 24890944-24891146,24891414-24891535,24891633-248917... 28 7.2
12_02_0191 + 15178717-15179045,15179147-15179546,15179624-151796... 27 9.5
02_03_0006 - 13868590-13869593,13869887-13870156,13870487-13871090 27 9.5
>11_04_0332 +
16465360-16465769,16465873-16466272,16466379-16466423,
16467113-16467139,16467201-16467266,16467889-16467950,
16468049-16468123,16468218-16468383,16468611-16468734,
16469737-16469843,16469992-16470102
Length = 530
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -1
Query: 175 TCLPMHYFHIYSSTKDDTFIPPIGIKV 95
+C +H I SS + DTFIPPI + V
Sbjct: 144 SCEAVHLTDIQSSIECDTFIPPIDLSV 170
>10_08_0683 -
19860777-19861070,19861677-19861874,19862498-19862659,
19862763-19862911,19863089-19863236,19863317-19863385,
19863471-19863719,19863937-19864131,19864444-19864560,
19864978-19866537
Length = 1046
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -3
Query: 218 VRFFGACQVSGVYMDLPSHALFSYLQ*YKR*HIYSPN 108
+ F G + G D PSH LF LQ + Y+PN
Sbjct: 586 IAFVGGLDLCGGRYDTPSHPLFRSLQTVHKEDYYNPN 622
>10_01_0132 -
1601421-1601657,1601761-1601922,1602812-1603721,
1604587-1604651,1604704-1604746,1605086-1605128,
1605874-1605955,1606270-1606464,1606567-1606721,
1611207-1611435,1611538-1611693,1612539-1613476,
1614946-1614967
Length = 1078
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +3
Query: 183 NPGYLASSEEANGRGRLLMS 242
+PG+L E+A GRGRL++S
Sbjct: 663 SPGWLMEPEKAPGRGRLMLS 682
>03_05_0902 +
28643395-28643708,28643830-28643921,28644342-28644443,
28645135-28645185,28645267-28645328,28645664-28645754,
28645911-28645975,28646053-28646247,28646346-28646465,
28646630-28646700,28646839-28647064,28647474-28647524,
28647629-28647857,28648140-28648279,28648527-28648652
Length = 644
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/59 (23%), Positives = 24/59 (40%)
Frame = +2
Query: 26 KKINREDTFINKFVTNHFRGVSSNFYSYWGNKCVIFCTTVNMKIMHGKASPYKPRILGK 202
K N +++ NH R + SN SY C T+ ++H + K +L +
Sbjct: 536 KGANNNTPANDRYQDNHLRRIGSNVSSYINMVCETLRNTIPKAVVHCQVKEAKRNLLNR 594
>03_01_0130 -
1007433-1007712,1007739-1007803,1007804-1008001,
1008103-1008273,1008405-1008553,1008780-1008927,
1009015-1009083,1009168-1009416,1009516-1009710,
1009869-1009985,1010205-1011329
Length = 921
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -3
Query: 218 VRFFGACQVSGVYMDLPSHALFSYLQ*YKR*HIYSPN 108
V F G + G D P+H LF LQ + Y+PN
Sbjct: 441 VAFVGGLDLCGGRYDTPTHPLFRSLQTLHKDDYYNPN 477
>08_02_0446 -
17221514-17221626,17221960-17222035,17222381-17222536,
17222645-17222723,17223858-17224087,17224938-17225076,
17225158-17225220,17226198-17226279,17226366-17226444,
17227046-17227225,17227331-17227590,17227704-17227806,
17227915-17228058,17228148-17228246
Length = 600
Score = 27.9 bits (59), Expect = 7.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 112 GE*MCHLLYYCKYENNAW 165
GE M H +Y+CK N+ W
Sbjct: 141 GEGMLHAVYFCKSNNSTW 158
>01_05_0749 +
24890944-24891146,24891414-24891535,24891633-24891721,
24891813-24891848,24892268-24892367,24892524-24892566,
24892645-24892739,24892978-24893036,24893114-24893613,
24893691-24893772,24893864-24894429,24894520-24894655,
24894750-24894812,24894942-24895172,24895282-24895395
Length = 812
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -1
Query: 544 VGLPTPVAGALMMRIFVGMRN-NNVNFKCPAKRTDGYS 434
VGLPT + L+++ + N++FK AK T+GY+
Sbjct: 635 VGLPTLESRELILKTLLSKETVENIDFKELAKMTEGYT 672
>12_02_0191 +
15178717-15179045,15179147-15179546,15179624-15179668,
15180506-15180571,15181829-15181890,15182161-15182326,
15183384-15183507,15184177-15184283,15184395-15184505
Length = 469
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 172 CLPMHYFHIYSSTKDDTFIPPIGIKV 95
C +H I SS + DTFIPPI + +
Sbjct: 118 CEAIHLTDIESSIECDTFIPPIDLSM 143
>02_03_0006 - 13868590-13869593,13869887-13870156,13870487-13871090
Length = 625
Score = 27.5 bits (58), Expect = 9.5
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -3
Query: 242 RHEKPPTSVRFFGACQVSGVYMDLPS-HALFSYLQ*YKR*HIYSPNRNKSL 93
RH PP VR G CQ V + PS H L ++ ++ +I +RN L
Sbjct: 537 RHLTPPPIVRAAGQCQEDEVKLSEPSIHKLAVQVKKLRKENIELRDRNAEL 587
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,570,196
Number of Sequences: 37544
Number of extensions: 301441
Number of successful extensions: 650
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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