Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0255
         (640 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12331| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.049
SB_47959| Best HMM Match : rve (HMM E-Value=3e-29)                     31   1.0  
SB_34135| Best HMM Match : rve (HMM E-Value=3e-29)                     31   1.0  
SB_59388| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_54416| Best HMM Match : rve (HMM E-Value=1.4e-27)                   31   1.0  
SB_3768| Best HMM Match : Involucrin (HMM E-Value=0.021)               31   1.0  
SB_37763| Best HMM Match : rve (HMM E-Value=4.2e-27)                   29   3.2  
SB_44470| Best HMM Match : SNF2_N (HMM E-Value=1.2e-17)                29   4.2  
SB_10782| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_39193| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.029)         28   7.4  

>SB_12331| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 748

 Score = 35.1 bits (77), Expect = 0.049
 Identities = 18/47 (38%), Positives = 22/47 (46%)
 Frame = +2

Query: 86  VSSNFYSYWGNKCVIFCTTVNMKIMHGKASPYKPRILGKLRRSERTW 226
           V  N   +W      FC   N++I HG  SP  P   G + RS RTW
Sbjct: 513 VCDNGTEFWNAMLNSFCEENNIEICHG--SPRTPTTQGLVERSNRTW 557


>SB_47959| Best HMM Match : rve (HMM E-Value=3e-29)
          Length = 622

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +2

Query: 131 FCTTVNMKIMHGKASPYKPRILGKLRRSERTW 226
           FC   N+KI HG A    P   G + RS RTW
Sbjct: 324 FCEENNIKICHGSAR--TPTTQGLVERSNRTW 353


>SB_34135| Best HMM Match : rve (HMM E-Value=3e-29)
          Length = 324

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +2

Query: 131 FCTTVNMKIMHGKASPYKPRILGKLRRSERTW 226
           FC   N+KI HG A    P   G + RS RTW
Sbjct: 243 FCEENNIKICHGSAR--TPTTQGLVERSNRTW 272


>SB_59388| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 350

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +2

Query: 131 FCTTVNMKIMHGKASPYKPRILGKLRRSERTW 226
           FC   N+KI HG A    P   G + RS RTW
Sbjct: 289 FCEENNIKICHGSAR--TPTTQGLVERSNRTW 318


>SB_54416| Best HMM Match : rve (HMM E-Value=1.4e-27)
          Length = 1068

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +2

Query: 131 FCTTVNMKIMHGKASPYKPRILGKLRRSERTW 226
           FC   N+KI HG A    P   G + RS RTW
Sbjct: 424 FCEENNIKICHGSAR--TPTTQGLVERSNRTW 453


>SB_3768| Best HMM Match : Involucrin (HMM E-Value=0.021)
          Length = 205

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +2

Query: 131 FCTTVNMKIMHGKASPYKPRILGKLRRSERTW 226
           FC   N+KI HG A    P   G + RS RTW
Sbjct: 18  FCEENNIKICHGSAR--TPTTQGLVERSNRTW 47


>SB_37763| Best HMM Match : rve (HMM E-Value=4.2e-27)
          Length = 510

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 134 CTTVNMKIMHGKASPYKPRILGKLRRSERTW 226
           C  +N+ ++  K+S Y P+  GK  RS RTW
Sbjct: 275 CLVLNVIVI--KSSAYSPQTQGKDERSHRTW 303


>SB_44470| Best HMM Match : SNF2_N (HMM E-Value=1.2e-17)
          Length = 549

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = -1

Query: 187 GFIWTCL--PMHYFHIYSSTKDDTFI-PPIGI 101
           G +W+ +  PM Y H+Y++T+      PPIGI
Sbjct: 209 GIMWSSVTSPMEYLHLYNNTRYIALTPPPIGI 240


>SB_10782| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 399

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 168 RQVHINPGYLASSEEANGRGRLLMSHFSCYSARCIHKIGK 287
           RQ+ +  GY    +    +  LL +H +  SAR ++K+G+
Sbjct: 204 RQIFLEMGYQYEWKTEEAKKNLLRTHTTAVSARMLYKLGQ 243


>SB_39193| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.029)
          Length = 1769

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +2

Query: 44  DTFINKFVTNHFRGVSSNFYSYWGN-KCVIFCTTVNMKIMH 163
           +T + K     F G S N+ S+WG   C +  T  +  ++H
Sbjct: 752 NTKLPKLTITKFNGKSENWLSFWGKFSCEVDATNASPYLIH 792


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,760,855
Number of Sequences: 59808
Number of extensions: 371882
Number of successful extensions: 1109
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)