Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0255
         (640 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.    30   1.6  
AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.    30   1.6  
Z92789-6|CAB07218.2|  303|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical
           protein C12C8.3b protein.
          Length = 1143

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 556 IYMSVGLPTPVAGALMMRIFVGMRNNNVNFKCPAKRTDGYS 434
           +Y+S  LP+P  GALM        NN++N   P  +   +S
Sbjct: 168 MYLSPTLPSPPRGALMSDCSTPTMNNHINSSTPLHQPRAFS 208


>Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical
           protein C12C8.3a protein.
          Length = 1147

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 556 IYMSVGLPTPVAGALMMRIFVGMRNNNVNFKCPAKRTDGYS 434
           +Y+S  LP+P  GALM        NN++N   P  +   +S
Sbjct: 168 MYLSPTLPSPPRGALMSDCSTPTMNNHINSSTPLHQPRAFS 208


>AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.
          Length = 1147

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 556 IYMSVGLPTPVAGALMMRIFVGMRNNNVNFKCPAKRTDGYS 434
           +Y+S  LP+P  GALM        NN++N   P  +   +S
Sbjct: 168 MYLSPTLPSPPRGALMSDCSTPTMNNHINSSTPLHQPRAFS 208


>AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.
          Length = 1143

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 556 IYMSVGLPTPVAGALMMRIFVGMRNNNVNFKCPAKRTDGYS 434
           +Y+S  LP+P  GALM        NN++N   P  +   +S
Sbjct: 168 MYLSPTLPSPPRGALMSDCSTPTMNNHINSSTPLHQPRAFS 208


>Z92789-6|CAB07218.2|  303|Caenorhabditis elegans Hypothetical
           protein H02I12.4 protein.
          Length = 303

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 104 SYWGNKCVIFCTTVNMKIMHGKASPYK 184
           +++G KC +FC  +  + +HGK   Y+
Sbjct: 124 NWFGEKCDVFCDNIEQR-LHGKRCNYR 149


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,205,345
Number of Sequences: 27780
Number of extensions: 296369
Number of successful extensions: 665
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)