Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0255
         (640 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g34300.1 68415.m04196 dehydration-responsive protein-related ...    30   1.5  
At5g55770.1 68418.m06951 DC1 domain-containing protein contains ...    29   3.4  
At1g58370.1 68414.m06640 glycosyl hydrolase family 10 protein / ...    29   3.4  
At1g29470.1 68414.m03605 dehydration-responsive protein-related ...    29   3.4  

>At2g34300.1 68415.m04196 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 770

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 524 NWCRESNTHINIYQPIH*VHVFSTWISSFKLIGCMGQ 634
           +WC   NT+   Y  +H  H+FST      L+  M +
Sbjct: 668 DWCESFNTYPRTYDLLHADHLFSTLRKRCNLVSVMAE 704


>At5g55770.1 68418.m06951 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 695

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 119 KCVIFCTTVNMKIMHGKASPYKPR 190
           +C + CTT+++  +HGK    KPR
Sbjct: 603 RCNVCCTTLHIDCLHGKEMYIKPR 626


>At1g58370.1 68414.m06640 glycosyl hydrolase family 10 protein /
           carbohydrate-binding domain-containing protein similar
           to (1,4)-beta-xylan endohydrolase GI:5306060 from
           [Triticum aestivum] ; contains Pfam profiles PF00331:
           Glycosyl hydrolase family 10, PF02018: Carbohydrate
           binding domain
          Length = 917

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = +2

Query: 65  VTNHFRGVSSNFYSYWGNKCVIFCTTVNMKIMHGKASPYKPRILGKLRRSERTW 226
           + NH    SS  +S+  N C  F  T    + HG   P K      ++  + TW
Sbjct: 31  IVNH--DFSSGMHSWHPNCCEAFVVTAESNVSHGVLDPSKCGSYVVVKNRKETW 82


>At1g29470.1 68414.m03605 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 770

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 524 NWCRESNTHINIYQPIH*VHVFSTWISSFKLIGCMGQ 634
           +WC   +T+   Y  +H  H+FS+      L+G M +
Sbjct: 668 DWCESFSTYPRTYDLLHADHLFSSLKKRCNLVGVMAE 704


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,076,182
Number of Sequences: 28952
Number of extensions: 262271
Number of successful extensions: 579
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)