Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0252
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    28   1.7  
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    27   2.2  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    27   3.9  
SPBC947.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   5.1  

>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -2

Query: 719 IQAWSSNHRACPLKRLFFGERWINAFTCSKSTGLI 615
           ++ WS +H      R++    WIN+F+  K  GL+
Sbjct: 497 VKTWSKSHTLGLCWRMYDRLEWINSFSSLKYVGLL 531


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 60  ASPRRPEARDRRGQLQTSWPEWSTSSKLT 146
           ++   P A+ RR +LQT+W E + S+ L+
Sbjct: 130 STANNPSAKPRRTRLQTAWKEATNSAGLS 158


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -2

Query: 737 SISHSKIQAWSSNHRACPLKRLFFGE 660
           S+ +S ++A SSN    P+KR F+G+
Sbjct: 686 SVLNSVVKAESSNITRLPIKRTFYGD 711


>SPBC947.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 100

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -3

Query: 601 IHYFLSAVIRILCLILPIFSIY 536
           +HYFL   ++ILC+ L +FSI+
Sbjct: 3   LHYFLQYDVQILCIAL-MFSIF 23


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,151,510
Number of Sequences: 5004
Number of extensions: 63240
Number of successful extensions: 132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)