Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0252
         (762 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0305 + 2299681-2299860,2299940-2300260,2300346-2300600           29   5.3  
03_05_0945 - 29070388-29072024,29072117-29072210                       28   9.3  

>11_01_0305 + 2299681-2299860,2299940-2300260,2300346-2300600
          Length = 251

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 340 LTTYISRWEAHLRCKC 293
           LTT +  WEAH RC+C
Sbjct: 121 LTTALPPWEAHPRCRC 136


>03_05_0945 - 29070388-29072024,29072117-29072210
          Length = 576

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 126 TTPARRSVVDLCGLWPQGGG 67
           T PAR +  D    WPQGGG
Sbjct: 15  TEPARFAFADALPAWPQGGG 34


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,120,647
Number of Sequences: 37544
Number of extensions: 437358
Number of successful extensions: 1008
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)