Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0252
         (762 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8241| Best HMM Match : PDEase_I (HMM E-Value=0)                     30   1.8  
SB_2894| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.5  

>SB_8241| Best HMM Match : PDEase_I (HMM E-Value=0)
          Length = 388

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 9   SCRWCLYQG*TREAINGASPRRPEARDRRGQLQTSWPEWSTSSKLTP 149
           S R   +QG  +EAI+ + P   E  +++G+LQ S    +T   + P
Sbjct: 305 SIRRSSWQGTRKEAIDQSEPETSEEEEKKGKLQNSTQNPTTRHNIKP 351


>SB_2894| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = +3

Query: 45  EAINGASPRRPEARDRRGQLQTSWPEWSTSSKLTPSRS--K*ILLRRKNFRGHFE 203
           E +NG   R    R    ++  S    S  S L P +     + LRR N+RG+FE
Sbjct: 116 ETMNGKQRRPSNNRPASPEVYESSTATSPKSLLPPRQQIPSHLYLRRSNYRGYFE 170


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,769,570
Number of Sequences: 59808
Number of extensions: 487571
Number of successful extensions: 1303
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1301
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)