Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0252
         (762 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77476-1|AAB84361.1|  295|Homo sapiens DAZLA protein protein.          38   0.030
U66726-1|AAB39935.1|  295|Homo sapiens germline specific RNA bin...    38   0.030
U66078-1|AAB63596.1|  295|Homo sapiens DAZLA protein.                  38   0.030
U65918-1|AAC50813.1|  295|Homo sapiens RNA binding protein protein.    38   0.030
BC027595-1|AAH27595.1|  295|Homo sapiens deleted in azoospermia-...    38   0.030
X15332-1|CAA33387.1| 1078|Homo sapiens alpha-1 (III) collagen pr...    31   4.5  
X14420-1|CAA32583.1| 1466|Homo sapiens prepro-alpha-1 type 3 col...    31   4.5  
BC132877-1|AAI32878.1|  608|Homo sapiens KIAA1822 protein.             31   4.5  
BC028178-1|AAH28178.1| 1163|Homo sapiens COL3A1 protein protein.       31   4.5  
AY358173-1|AAQ88540.1|  608|Homo sapiens ARAR9245 protein.             31   4.5  
AY016295-2|AAL13167.1| 1466|Homo sapiens type III preprocollagen...    31   4.5  
AC066694-1|AAY24164.1| 1466|Homo sapiens unknown protein.              31   4.5  

>U77476-1|AAB84361.1|  295|Homo sapiens DAZLA protein protein.
          Length = 295

 Score = 38.3 bits (85), Expect = 0.030
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = +3

Query: 336 VRSQYSYNGCPAFQAKKHYCFTAEIGAVVVPTRADLHEVLPPFG 467
           V  Q SY   PA+ A  ++C   + GA VVP    +HE  PP G
Sbjct: 197 VGEQRSYVVPPAYSAVNYHCNEVDPGAEVVPNECSVHEATPPSG 240


>U66726-1|AAB39935.1|  295|Homo sapiens germline specific RNA
           binding protein protein.
          Length = 295

 Score = 38.3 bits (85), Expect = 0.030
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = +3

Query: 336 VRSQYSYNGCPAFQAKKHYCFTAEIGAVVVPTRADLHEVLPPFG 467
           V  Q SY   PA+ A  ++C   + GA VVP    +HE  PP G
Sbjct: 197 VGEQRSYVVPPAYSAVNYHCNEVDPGAEVVPNECSVHEATPPSG 240


>U66078-1|AAB63596.1|  295|Homo sapiens DAZLA protein.
          Length = 295

 Score = 38.3 bits (85), Expect = 0.030
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = +3

Query: 336 VRSQYSYNGCPAFQAKKHYCFTAEIGAVVVPTRADLHEVLPPFG 467
           V  Q SY   PA+ A  ++C   + GA VVP    +HE  PP G
Sbjct: 197 VGEQRSYVVPPAYSAVNYHCNEVDPGAEVVPNECSVHEATPPSG 240


>U65918-1|AAC50813.1|  295|Homo sapiens RNA binding protein protein.
          Length = 295

 Score = 38.3 bits (85), Expect = 0.030
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = +3

Query: 336 VRSQYSYNGCPAFQAKKHYCFTAEIGAVVVPTRADLHEVLPPFG 467
           V  Q SY   PA+ A  ++C   + GA VVP    +HE  PP G
Sbjct: 197 VGEQRSYVVPPAYSAVNYHCNEVDPGAEVVPNECSVHEATPPSG 240


>BC027595-1|AAH27595.1|  295|Homo sapiens deleted in
           azoospermia-like protein.
          Length = 295

 Score = 38.3 bits (85), Expect = 0.030
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = +3

Query: 336 VRSQYSYNGCPAFQAKKHYCFTAEIGAVVVPTRADLHEVLPPFG 467
           V  Q SY   PA+ A  ++C   + GA VVP    +HE  PP G
Sbjct: 197 VGEQRSYVVPPAYSAVNYHCNEVDPGAEVVPNECSVHEATPPSG 240


>X15332-1|CAA33387.1| 1078|Homo sapiens alpha-1 (III) collagen
           protein.
          Length = 1078

 Score = 31.1 bits (67), Expect = 4.5
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 31  KGEPGKPSTEPLPAALRPETAEVNYRPPGRSGQP 132
           KGEPG P  + +P    P        PPG +GQP
Sbjct: 596 KGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQP 629


>X14420-1|CAA32583.1| 1466|Homo sapiens prepro-alpha-1 type 3
           collagen protein.
          Length = 1466

 Score = 31.1 bits (67), Expect = 4.5
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 31  KGEPGKPSTEPLPAALRPETAEVNYRPPGRSGQP 132
           KGEPG P  + +P    P        PPG +GQP
Sbjct: 743 KGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQP 776


>BC132877-1|AAI32878.1|  608|Homo sapiens KIAA1822 protein.
          Length = 608

 Score = 31.1 bits (67), Expect = 4.5
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = +1

Query: 64  LPAALRPETAEVNYRPPGRSGQPLRNSLHRGQNESC*EGRTSEVT 198
           L AA  P+   +++RPP R  QPLR          C EGR +E+T
Sbjct: 15  LGAAAHPQC--LDFRPPFRPTQPLRLCAQYSDFGCCDEGRDAELT 57


>BC028178-1|AAH28178.1| 1163|Homo sapiens COL3A1 protein protein.
          Length = 1163

 Score = 31.1 bits (67), Expect = 4.5
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 31  KGEPGKPSTEPLPAALRPETAEVNYRPPGRSGQP 132
           KGEPG P  + +P    P        PPG +GQP
Sbjct: 743 KGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQP 776


>AY358173-1|AAQ88540.1|  608|Homo sapiens ARAR9245 protein.
          Length = 608

 Score = 31.1 bits (67), Expect = 4.5
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = +1

Query: 64  LPAALRPETAEVNYRPPGRSGQPLRNSLHRGQNESC*EGRTSEVT 198
           L AA  P+   +++RPP R  QPLR          C EGR +E+T
Sbjct: 15  LGAAAHPQC--LDFRPPFRPTQPLRLCAQYSDFGCCDEGRDAELT 57


>AY016295-2|AAL13167.1| 1466|Homo sapiens type III preprocollagen
           alpha 1 chain protein.
          Length = 1466

 Score = 31.1 bits (67), Expect = 4.5
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 31  KGEPGKPSTEPLPAALRPETAEVNYRPPGRSGQP 132
           KGEPG P  + +P    P        PPG +GQP
Sbjct: 743 KGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQP 776


>AC066694-1|AAY24164.1| 1466|Homo sapiens unknown protein.
          Length = 1466

 Score = 31.1 bits (67), Expect = 4.5
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 31  KGEPGKPSTEPLPAALRPETAEVNYRPPGRSGQP 132
           KGEPG P  + +P    P        PPG +GQP
Sbjct: 743 KGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQP 776


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,878,039
Number of Sequences: 237096
Number of extensions: 2593283
Number of successful extensions: 13900
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13900
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9144232952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)