Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0252
         (762 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00063-3|AAK18959.2|  446|Caenorhabditis elegans Hypothetical pr...    31   0.89 
Z74042-8|CAA98525.1|  299|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z95559-1|CAB08999.1|  289|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z68215-7|CAA92453.1|  289|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z68009-4|CAA92006.1|  152|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AL022716-5|CAB97232.1|  291|Caenorhabditis elegans Hypothetical ...    28   6.3  
Z81091-5|CAB03142.1|  768|Caenorhabditis elegans Hypothetical pr...    28   8.3  
U53155-5|AAC48270.1|  303|Caenorhabditis elegans Collagen protei...    28   8.3  
AF067212-1|AAC16997.3|  160|Caenorhabditis elegans Hypothetical ...    28   8.3  
AB072926-1|BAB69889.1|  303|Caenorhabditis elegans collagen prot...    28   8.3  

>U00063-3|AAK18959.2|  446|Caenorhabditis elegans Hypothetical
           protein F56C9.3 protein.
          Length = 446

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 339 LQLISQGGRRIYVVNVYGLQEPLNTRW 259
           +QLI    RRI+   VYG+++P+N  W
Sbjct: 219 VQLIISSVRRIHDAAVYGIKDPINVSW 245


>Z74042-8|CAA98525.1|  299|Caenorhabditis elegans Hypothetical
           protein T11F9.9 protein.
          Length = 299

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +1

Query: 34  GEPGKPS-TEPL-PAALRPETAEVNYRPPGRSGQP 132
           G+PG+ + +EP+ P A  P+ A     PPG+ GQP
Sbjct: 202 GQPGQDAPSEPITPGAPGPQGAPGPQGPPGQPGQP 236


>Z95559-1|CAB08999.1|  289|Caenorhabditis elegans Hypothetical
           protein Y41E3.2 protein.
          Length = 289

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +1

Query: 34  GEPGKPSTEPLPAALRPETAEVNYRPPGRSGQP 132
           G PG+P  +P      P        PPG  GQP
Sbjct: 117 GTPGRPPQQPCEPTTPPPCQPCPQGPPGPPGQP 149


>Z68215-7|CAA92453.1|  289|Caenorhabditis elegans Hypothetical
           protein C53B4.5 protein.
          Length = 289

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +1

Query: 28  IKGEPGKPSTEPLPAALRPETAEVNYRPPGRSGQP 132
           + G PG+P  EP      P        PPG +G P
Sbjct: 115 LNGNPGRPPKEPCEPITPPPCKPCPEGPPGPAGPP 149


>Z68009-4|CAA92006.1|  152|Caenorhabditis elegans Hypothetical
           protein R09A8.4 protein.
          Length = 152

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 28  IKGEPGKPSTEPLPAALRPETAEVNYRPPGRSGQP 132
           ++GE G      LP  + P+    N  PPG  G+P
Sbjct: 71  VRGEKGPSGPPGLPGLVGPKGFSGNSGPPGSPGEP 105


>AL022716-5|CAB97232.1|  291|Caenorhabditis elegans Hypothetical
           protein C24F3.6 protein.
          Length = 291

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +1

Query: 28  IKGEPGKPSTEPLPAALRPETAEVNYRPPGRSGQP 132
           + G PG+P  EP      P        PPG +G P
Sbjct: 117 LNGNPGRPPKEPCEPLTPPPCKPCPEGPPGPAGPP 151


>Z81091-5|CAB03142.1|  768|Caenorhabditis elegans Hypothetical
           protein F55H12.1 protein.
          Length = 768

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +1

Query: 256 SPPGVKWFLEPIDIYNVNAPPTLRYKL*DLSIVTTAAPPFKPKSITASRQK 408
           +P   K  + P  +    APPT+R  +   ++ TT APP    + + S  K
Sbjct: 3   TPVSTKKTIAPSTMKTTVAPPTMRTTMAPTTMKTTVAPPTMKTTRSPSTMK 53


>U53155-5|AAC48270.1|  303|Caenorhabditis elegans Collagen protein
           43 protein.
          Length = 303

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = +1

Query: 34  GEPGKPSTEPLPAALRPETAEVNYRPPGRSGQP 132
           G PGKP T P      P        PPG  G P
Sbjct: 131 GVPGKPPTAPCEPTTPPPCKPCPQGPPGPPGPP 163


>AF067212-1|AAC16997.3|  160|Caenorhabditis elegans Hypothetical
           protein F37F2.2 protein.
          Length = 160

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 402 AEIGAVVVPTRADLHEVLPPFGFIGFVERT 491
           ++I AV  PT  ++H+VL   GF   +ERT
Sbjct: 36  SQILAVENPTSVEIHDVLAAVGFNPLLERT 65


>AB072926-1|BAB69889.1|  303|Caenorhabditis elegans collagen
           protein.
          Length = 303

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = +1

Query: 34  GEPGKPSTEPLPAALRPETAEVNYRPPGRSGQP 132
           G PGKP T P      P        PPG  G P
Sbjct: 131 GVPGKPPTAPCEPTTPPPCKPCPQGPPGPPGPP 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,561,753
Number of Sequences: 27780
Number of extensions: 368613
Number of successful extensions: 941
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)