Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0250
         (432 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    44   0.001
UniRef50_Q5CXS4 Cluster: Hypothetical low complexity protein wit...    32   5.9  
UniRef50_P38273 Cluster: Vacuolar fusion protein CCZ1; n=2; Sacc...    31   7.8  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 44.4 bits (100), Expect = 0.001
 Identities = 18/20 (90%), Positives = 19/20 (95%)
 Frame = -2

Query: 359 LLRWVDELTAHLVLSRYWTP 300
           LLRWVDELTAHLVLS YW+P
Sbjct: 156 LLRWVDELTAHLVLSGYWSP 175


>UniRef50_Q5CXS4 Cluster: Hypothetical low complexity protein with
           coiled coil regions; n=3; Apicomplexa|Rep: Hypothetical
           low complexity protein with coiled coil regions -
           Cryptosporidium parvum Iowa II
          Length = 1624

 Score = 31.9 bits (69), Expect = 5.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 140 RAFVDSSNAELSLVHVLKSSWPKG 211
           R +  S N ELS + + +SSWP+G
Sbjct: 266 RGYSQSDNEELSFIEIFRSSWPEG 289


>UniRef50_P38273 Cluster: Vacuolar fusion protein CCZ1; n=2;
           Saccharomyces cerevisiae|Rep: Vacuolar fusion protein
           CCZ1 - Saccharomyces cerevisiae (Baker's yeast)
          Length = 704

 Score = 31.5 bits (68), Expect = 7.8
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +3

Query: 192 SRHGLKDKT*GSPCNYT*DLRTY--ISRWVAHLHC 290
           +R  +  KT G   N+T DL T   IS W+ HLHC
Sbjct: 227 NRESMGTKTYGLVRNFTSDLNTLPDISNWLYHLHC 261


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 416,084,214
Number of Sequences: 1657284
Number of extensions: 7247322
Number of successful extensions: 13043
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13043
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 21075479950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)