Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0250
         (432 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha...    27   1.6  
SPAC30C2.05 |erv14||cornichon family protein Erv14|Schizosacchar...    26   2.8  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   2.8  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    24   8.7  

>SPCC1753.02c |git3||G-protein coupled receptor
           Git3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +1

Query: 10  KFM-GLSWSHAFVNVISIFSLSTVMFVT 90
           +FM GL+WS  +   I+I +L T MF++
Sbjct: 184 RFMFGLNWSFDYALSIAIIALQTCMFIS 211


>SPAC30C2.05 |erv14||cornichon family protein
           Erv14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 141

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 31  SHAFVNVISIFSLSTVMFVTQT*LKVCNARQIYHKT 138
           SH  V ++ +     ++F+    L V +A Q+ HKT
Sbjct: 61  SHTLVTLLLLLGKKWLLFLANLPLLVFHANQVIHKT 96


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 339 AHSPPGVKSLLDPIDIYNVNAPPTLR 262
           A  PP +K+   P+DI N++A   L+
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKLK 249


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 249 GLKYSYKGCPTSYPLG 202
           G++Y YKGC T   +G
Sbjct: 872 GVEYDYKGCNTEVNIG 887


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,658,563
Number of Sequences: 5004
Number of extensions: 29102
Number of successful extensions: 57
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)