Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0250
         (432 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0154 - 1355601-1356102,1356197-1356389,1356465-1356520,135...    28   3.7  
05_02_0152 + 7126802-7127315,7127451-7129190,7130718-7131778           27   6.5  
05_01_0157 + 1056024-1056116,1056417-1056631,1057027-1057297,105...    27   8.6  

>01_01_0154 -
           1355601-1356102,1356197-1356389,1356465-1356520,
           1356997-1357066,1357188-1357314,1357418-1357695,
           1357908-1358065,1358166-1358246,1358339-1358410,
           1358531-1358602,1358729-1358867,1358987-1360045,
           1360170-1360257
          Length = 964

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -1

Query: 276 PPTLRYKF*GLKYSYKGCPTSYPLGHDDFK-TCTRLNSALELSTKALGL 133
           P  L+    GL+Y +KGC  + P+ H D K T   LN+ LE      GL
Sbjct: 725 PYALQQTLLGLEYLHKGC--NPPIIHRDVKATNILLNTRLEAKIADFGL 771


>05_02_0152 + 7126802-7127315,7127451-7129190,7130718-7131778
          Length = 1104

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 231 KGCPTSYPLGHDDFKTCTRLNSALELSTKALGLVINL 121
           K CP SYP  HD  ++         L+ K +G ++N+
Sbjct: 353 KQCPESYPQLHDIGRSIASRLCGSPLAAKTIGRLLNM 389


>05_01_0157 +
           1056024-1056116,1056417-1056631,1057027-1057297,
           1058040-1058365,1058677-1058769,1060182-1060244,
           1062788-1062928,1063438-1063620,1064215-1064413,
           1064498-1064702,1065817-1065944
          Length = 638

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 90  ANITEGLQRSSNLSQDLE 143
           A +TEGL RS+N+  DL+
Sbjct: 116 ATVTEGLHRSNNIHHDLD 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,744,121
Number of Sequences: 37544
Number of extensions: 212333
Number of successful extensions: 359
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)