Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0250
         (432 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66524-3|CAB54303.1|  475|Caenorhabditis elegans Hypothetical pr...    28   2.5  
Z82274-4|CAB05228.1|  429|Caenorhabditis elegans Hypothetical pr...    27   4.4  
Z82274-3|CAB05229.1|  435|Caenorhabditis elegans Hypothetical pr...    27   4.4  
Z80215-6|CAD56562.2| 1052|Caenorhabditis elegans Hypothetical pr...    27   5.8  
Z80215-5|CAB02273.3| 1049|Caenorhabditis elegans Hypothetical pr...    27   5.8  

>Z66524-3|CAB54303.1|  475|Caenorhabditis elegans Hypothetical
           protein T13H5.6 protein.
          Length = 475

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +3

Query: 114 RSSNLSQDLEPSLIAPMLN 170
           +S N SQD  PS+ APMLN
Sbjct: 348 KSRNASQDSVPSMFAPMLN 366


>Z82274-4|CAB05228.1|  429|Caenorhabditis elegans Hypothetical
           protein JC8.6b protein.
          Length = 429

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = +3

Query: 72  NCHVCHANITEGLQRSSNLSQDLE--PSLIAPML 167
           NC  CH NI    QRS  + Q LE  P+   P +
Sbjct: 196 NCKDCHNNIEYDSQRSKAIRQSLERNPNAFKPKI 229


>Z82274-3|CAB05229.1|  435|Caenorhabditis elegans Hypothetical
           protein JC8.6a protein.
          Length = 435

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = +3

Query: 72  NCHVCHANITEGLQRSSNLSQDLE--PSLIAPML 167
           NC  CH NI    QRS  + Q LE  P+   P +
Sbjct: 202 NCKDCHNNIEYDSQRSKAIRQSLERNPNAFKPKI 235


>Z80215-6|CAD56562.2| 1052|Caenorhabditis elegans Hypothetical
           protein C36B1.8b protein.
          Length = 1052

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 243 KYSYKGCPTSYPLGHDDFKTCTRLNSALE 157
           KY ++GC TSY    DD K  +   S +E
Sbjct: 770 KYLHQGCTTSYSSFDDDNKKLSASTSTME 798


>Z80215-5|CAB02273.3| 1049|Caenorhabditis elegans Hypothetical
           protein C36B1.8a protein.
          Length = 1049

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 243 KYSYKGCPTSYPLGHDDFKTCTRLNSALE 157
           KY ++GC TSY    DD K  +   S +E
Sbjct: 770 KYLHQGCTTSYSSFDDDNKKLSASTSTME 798


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,463,677
Number of Sequences: 27780
Number of extensions: 175344
Number of successful extensions: 353
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)