Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0250
         (432 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g42515.1 68414.m04902 hypothetical protein                          28   3.1  
At5g46450.1 68418.m05721 disease resistance protein (TIR-NBS-LRR...    27   4.1  

>At1g42515.1 68414.m04902 hypothetical protein
          Length = 206

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -2

Query: 188 KHVQDLIQHWSYQRRL 141
           KHV D+ + WSY++RL
Sbjct: 116 KHVMDISKEWSYEKRL 131


>At5g46450.1 68418.m05721 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1123

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 195 DFKTCTRLNSALELSTKALGLVINLTSVANLQLCLRD 85
           DF  C+RL S  ++ST    LV++ T +  +   + D
Sbjct: 825 DFSGCSRLRSFPDISTNIFSLVLDGTGIEEVPWWIED 861


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,967,322
Number of Sequences: 28952
Number of extensions: 161753
Number of successful extensions: 300
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 685039728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)