Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0249
(672 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 105 4e-24
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 29 0.81
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 26 4.3
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 26 4.3
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 26 5.7
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S... 26 5.7
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|... 26 5.7
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 26 5.7
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc... 26 5.7
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 26 5.7
SPCC126.10 |iah1||isoamyl acetate hydrolytic enzyme Iah1 |Schizo... 25 7.5
SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1 |Sc... 25 7.5
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 105 bits (253), Expect = 4e-24
Identities = 48/73 (65%), Positives = 59/73 (80%)
Frame = -2
Query: 671 QALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTI 492
QAL IPTKI++GTIEI +DVH++ KVG SEATLLNMLNISPF+YG+ V +YD G +
Sbjct: 137 QALGIPTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNISPFTYGMDVLTIYDQGNV 196
Query: 491 FAPEILDIKPEDL 453
F+PEILD+ EDL
Sbjct: 197 FSPEILDVSEEDL 209
Score = 48.4 bits (110), Expect = 9e-07
Identities = 30/95 (31%), Positives = 38/95 (40%)
Frame = -3
Query: 421 VAALSLAIGYPTIASAPHSIANGFKNLLXXXXXXXXXXXXXXXIKEFIKDPSKFXXXXXX 242
+ A+SL YPTI S HS+ N +KNL+ K F+ DPS F
Sbjct: 220 ITAISLGANYPTILSVMHSVVNAYKNLVAVSLATEYTFEGTEQTKAFLADPSAF--VVAA 277
Query: 241 XXXXXXXXXXXXXXXXXXXXXXXETDDDMGFGLFD 137
E+D+DMGFGLFD
Sbjct: 278 APAAAAGGEAEAPAAEAAAEEEEESDEDMGFGLFD 312
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 28.7 bits (61), Expect = 0.81
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -2
Query: 554 LNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLPCQ 444
LN S + YGL + + DS +F P+ PE +PCQ
Sbjct: 63 LNGSSY-YGLAISHIDDSQRVFGPD-----PESVPCQ 93
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 26.2 bits (55), Expect = 4.3
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +2
Query: 275 LNELLDGGSFFKLNLCDSSDGQKVLETIGNGMRG*SNSWVTNSQRKSSYISNSSLEL 445
L L+ G S+ SSDG + + + ++ + SWV ++R S IS S E+
Sbjct: 82 LRRLIQGNSYRIFGTGKSSDGLATYKLLLDELKSLTKSWVM-AKRFSDAISGSDSEV 137
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 26.2 bits (55), Expect = 4.3
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +2
Query: 296 GSFFKLNLCDSSDGQKVLETIGNGMRG*SNSWVTNSQRKSSYISNSS 436
G FF + CD + G K + N S N K++Y +N S
Sbjct: 405 GKFFSQHSCDLASGNKSAQEGQNQFLSMVESEAKNLMNKTNYSANQS 451
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 25.8 bits (54), Expect = 5.7
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -3
Query: 169 TDDDMGFGLFD 137
+D+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110
>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 25.8 bits (54), Expect = 5.7
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -3
Query: 169 TDDDMGFGLFD 137
+D+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110
>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 109
Score = 25.8 bits (54), Expect = 5.7
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -3
Query: 169 TDDDMGFGLFD 137
+D+DMGFGLFD
Sbjct: 99 SDEDMGFGLFD 109
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 25.8 bits (54), Expect = 5.7
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -3
Query: 169 TDDDMGFGLFD 137
+D+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110
>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 25.8 bits (54), Expect = 5.7
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -3
Query: 169 TDDDMGFGLFD 137
+D+DMGFGLFD
Sbjct: 99 SDEDMGFGLFD 109
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 25.8 bits (54), Expect = 5.7
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -3
Query: 169 TDDDMGFGLFD 137
+D+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110
>SPCC126.10 |iah1||isoamyl acetate hydrolytic enzyme Iah1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 246
Score = 25.4 bits (53), Expect = 7.5
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 554 LNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLPCQVPSW 432
L+ S Y L+ ++ + + PE+L P +LP Q P W
Sbjct: 203 LHFSSLGYSLLFNEIVATISKAWPELL---PNNLPLQFPHW 240
>SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 215
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 615 IVDDFNSTL*NLGRDRKSL 671
+VD NSTL N+GR R S+
Sbjct: 98 VVDSVNSTLNNIGRGRLSV 116
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,232,780
Number of Sequences: 5004
Number of extensions: 40802
Number of successful extensions: 112
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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