Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0249
(672 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 103 1e-22
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 103 1e-22
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 102 3e-22
03_02_0966 + 12783515-12783901 33 0.16
01_01_0703 - 5425713-5425862,5426302-5426451,5426853-5426964,542... 29 2.6
03_03_0258 - 15905847-15905990,15906088-15906244,15906374-159065... 29 3.4
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 103 bits (247), Expect = 1e-22
Identities = 46/73 (63%), Positives = 59/73 (80%)
Frame = -2
Query: 671 QALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTI 492
Q L+IPTKI+KGT+EII V ++K GDKVG+SE+ LL L I PFSYGLV+ VYDSG++
Sbjct: 142 QVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDSGSV 201
Query: 491 FAPEILDIKPEDL 453
F+PE+LD+ EDL
Sbjct: 202 FSPEVLDLTEEDL 214
Score = 66.1 bits (154), Expect = 2e-11
Identities = 32/62 (51%), Positives = 41/62 (66%)
Frame = -3
Query: 445 KFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXXXXXXXXXXXXXXXIKEFIKDPS 266
KF +GV+ VA++SLAI YPTIA+APH NG+KN+L IKE++KDPS
Sbjct: 217 KFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAVETEYSYPHADKIKEYLKDPS 276
Query: 265 KF 260
KF
Sbjct: 277 KF 278
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 103 bits (247), Expect = 1e-22
Identities = 46/73 (63%), Positives = 59/73 (80%)
Frame = -2
Query: 671 QALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTI 492
Q L+IPTKI+KGT+EII V ++K GDKVG+SE+ LL L I PFSYGLV+ VYDSG++
Sbjct: 142 QVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDSGSV 201
Query: 491 FAPEILDIKPEDL 453
F+PE+LD+ EDL
Sbjct: 202 FSPEVLDLTEEDL 214
Score = 66.1 bits (154), Expect = 2e-11
Identities = 32/62 (51%), Positives = 41/62 (66%)
Frame = -3
Query: 445 KFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXXXXXXXXXXXXXXXIKEFIKDPS 266
KF +GV+ VA++SLAI YPTIA+APH NG+KN+L IKE++KDPS
Sbjct: 217 KFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAVETEYSYPHADKIKEYLKDPS 276
Query: 265 KF 260
KF
Sbjct: 277 KF 278
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 102 bits (244), Expect = 3e-22
Identities = 45/73 (61%), Positives = 59/73 (80%)
Frame = -2
Query: 671 QALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTI 492
Q L+IPTKI+KGT+EII V ++K GDKVG+SE+ LL L I PFSYGLV+ VYDSG++
Sbjct: 142 QVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDSGSV 201
Query: 491 FAPEILDIKPEDL 453
F+PE+LD+ +DL
Sbjct: 202 FSPEVLDLTEDDL 214
Score = 68.5 bits (160), Expect = 5e-12
Identities = 39/103 (37%), Positives = 50/103 (48%)
Frame = -3
Query: 445 KFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXXXXXXXXXXXXXXXIKEFIKDPS 266
KF +GV+ VA++SLAI YPTIA+APH NG+KN+L IKE++KDPS
Sbjct: 217 KFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAVETEYSYPHADKIKEYLKDPS 276
Query: 265 KFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETDDDMGFGLFD 137
KF E+D D+G LFD
Sbjct: 277 KFAVAAPVAADSGAAAPSAAKEEEKKEEPEEESDGDLGMSLFD 319
>03_02_0966 + 12783515-12783901
Length = 128
Score = 33.5 bits (73), Expect = 0.16
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = -3
Query: 463 QKISRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLL 338
+K S A AG+A VAA++ A+ P +A A +++ KN L
Sbjct: 58 EKASAAAAAAGIAAVAAVAAALAVPEVAEAAPALSPSLKNFL 99
>01_01_0703 -
5425713-5425862,5426302-5426451,5426853-5426964,
5427120-5427481,5427578-5427712,5427812-5427889,
5427989-5428174,5428266-5428452,5428552-5428658,
5428732-5428806,5428885-5429040,5429165-5429437,
5429548-5429643,5429724-5429814,5429883-5430385
Length = 886
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/51 (27%), Positives = 31/51 (60%)
Frame = -2
Query: 629 EIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEI 477
E++ +++P D VG S +++ +++ P+S VV+ +Y+S + A +I
Sbjct: 346 EMLPSGFLIRPSD-VGGSVIHIVDHMDLEPWSVPEVVRPLYESSAMVAQKI 395
>03_03_0258 -
15905847-15905990,15906088-15906244,15906374-15906504,
15906991-15907126,15907193-15907464,15907874-15908169,
15908279-15908646,15908922-15908987,15909064-15909129,
15909226-15909297,15909391-15909459,15909549-15909620,
15909708-15909776,15909874-15909945,15910046-15910178,
15911223-15911361
Length = 753
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 499 PESYTCLTTRPYENGEMFNMLRRVASEAPTLSPGFKMCTSL 621
PE LT RP +G+ FN LR ++ +PT G + S+
Sbjct: 358 PEKNEPLTLRPIASGK-FNQLRTISIISPTAKEGLQKTVSM 397
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,026,753
Number of Sequences: 37544
Number of extensions: 285247
Number of successful extensions: 655
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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