BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ceN-0249 (672 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37) 49 4e-06 SB_7586| Best HMM Match : 7tm_1 (HMM E-Value=0.2) 29 4.5 SB_27097| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9 >SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37) Length = 261 Score = 48.8 bits (111), Expect = 4e-06 Identities = 21/31 (67%), Positives = 28/31 (90%) Frame = -2 Query: 671 QALSIPTKISKGTIEIINDVHILKPGDKVGA 579 QAL+IPTKI++GTIEIINDVH++K +K+ A Sbjct: 121 QALAIPTKIARGTIEIINDVHLIKKDEKLKA 151 >SB_7586| Best HMM Match : 7tm_1 (HMM E-Value=0.2) Length = 362 Score = 28.7 bits (61), Expect = 4.5 Identities = 10/41 (24%), Positives = 23/41 (56%) Frame = -3 Query: 529 VLLLSRYMILELFLHLKFWTSNQKISRAKFQAGVANVAALS 407 +++L R +++ + KFW + +K+S A + VA ++ Sbjct: 61 MMMLDRLLVIRCGMRYKFWMTTEKVSVAVLDMWLVTVAVIT 101 >SB_27097| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 294 Score = 27.9 bits (59), Expect = 7.9 Identities = 10/31 (32%), Positives = 20/31 (64%) Frame = -3 Query: 544 LHSHMVLLLSRYMILELFLHLKFWTSNQKIS 452 L S +++++ RY+ + LH + W S +K+S Sbjct: 145 LLSMLLMMVDRYIAIAWGLHYRIWKSQRKVS 175 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,822,748 Number of Sequences: 59808 Number of extensions: 313898 Number of successful extensions: 683 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 656 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 683 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1721264831 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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