Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0249
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...   118   4e-27
U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal prote...    27   9.2  
AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical ...    27   9.2  
AF038618-11|AAM98016.1|  419|Caenorhabditis elegans P38 map kina...    27   9.2  
AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal pro...    27   9.2  

>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score =  118 bits (284), Expect = 4e-27
 Identities = 51/73 (69%), Positives = 65/73 (89%)
 Frame = -2

Query: 671 QALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTI 492
           QAL IPTKI++GTIEI+NDVH++K GDKVGASE+ LLNML ++PFSYGLVV+QVYD GT+
Sbjct: 139 QALQIPTKIARGTIEILNDVHLIKEGDKVGASESALLNMLGVTPFSYGLVVRQVYDDGTL 198

Query: 491 FAPEILDIKPEDL 453
           + PE+LD+  E+L
Sbjct: 199 YTPEVLDMTTEEL 211



 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 42/105 (40%), Positives = 52/105 (49%)
 Frame = -3

Query: 451 RAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXXXXXXXXXXXXXXXIKEFIKD 272
           R +F +GV NVA++SLA+ YPT+AS  HS+ANG +N+L               IK FI D
Sbjct: 212 RKRFLSGVRNVASVSLAVNYPTLASVAHSLANGLQNMLGVAAVTDVSFKEAETIKAFIAD 271

Query: 271 PSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETDDDMGFGLFD 137
           PSKF                             E+DDDMGFGLFD
Sbjct: 272 PSKF----AAAAPAAAAAPAAAAPAAKKEEPKEESDDDMGFGLFD 312


>U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical
           protein C37A2.7 protein.
          Length = 107

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = -3

Query: 169 TDDDMGFGLFD 137
           +DDDMGFGLFD
Sbjct: 97  SDDDMGFGLFD 107


>U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal protein
           P1 homolog protein.
          Length = 111

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = -3

Query: 169 TDDDMGFGLFD 137
           +DDDMGFGLFD
Sbjct: 101 SDDDMGFGLFD 111


>AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical
           protein Y62E10A.1 protein.
          Length = 110

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = -3

Query: 169 TDDDMGFGLFD 137
           +DDDMGFGLFD
Sbjct: 100 SDDDMGFGLFD 110


>AF038618-11|AAM98016.1|  419|Caenorhabditis elegans P38 map kinase
           family protein 2,isoform a protein.
          Length = 419

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 19/51 (37%), Positives = 31/51 (60%)
 Frame = +3

Query: 351 KPLAMECGAEAIVG*PIAKERAATLATPAWNLAREIFWFDVQNFRCKNSSR 503
           +P+AM+    +IV    A+ERA TL+   W   RE+ W +++ F  +NS+R
Sbjct: 359 EPVAMDTVINSIVTIDPAEERATTLSD--W---RELIWNEIRLF--QNSAR 402


>AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal
           protein, acidic protein 1 protein.
          Length = 111

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = -3

Query: 169 TDDDMGFGLFD 137
           +DDDMGFGLFD
Sbjct: 101 SDDDMGFGLFD 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,364,855
Number of Sequences: 27780
Number of extensions: 230553
Number of successful extensions: 554
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)