Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0249
         (672 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)...   101   6e-22
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)...   101   6e-22
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)      100   1e-21
At1g25260.1 68414.m03134 acidic ribosomal protein P0-related con...    35   0.057
At5g12430.1 68418.m01461 DNAJ heat shock N-terminal domain-conta...    28   6.5  
At2g22830.1 68415.m02711 squalene monooxygenase, putative / squa...    28   6.5  
At5g56870.1 68418.m07097 beta-galactosidase, putative / lactase,...    27   8.6  

>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
           similar to 60S acidic ribosomal protein P0 GI:2088654
           [Arabidopsis thaliana]
          Length = 323

 Score =  101 bits (241), Expect = 6e-22
 Identities = 45/73 (61%), Positives = 59/73 (80%)
 Frame = -2

Query: 671 QALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTI 492
           Q L+IPTKI+KGT+EII  V ++K GDKVG+SEA LL  L I PFSYGLVV+ VYD+G++
Sbjct: 141 QVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSV 200

Query: 491 FAPEILDIKPEDL 453
           F+PE+LD+  + L
Sbjct: 201 FSPEVLDLTEDQL 213



 Score = 60.9 bits (141), Expect = 8e-10
 Identities = 27/62 (43%), Positives = 38/62 (61%)
 Frame = -3

Query: 445 KFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXXXXXXXXXXXXXXXIKEFIKDPS 266
           KF +G++ V +L+LA+ YPT+A+APH   N +KN L               +KEF+KDPS
Sbjct: 216 KFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIAVATDYTFPQAEKVKEFLKDPS 275

Query: 265 KF 260
           KF
Sbjct: 276 KF 277


>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
           similar to putative 60S acidic ribosomal protein P0
           GB:P50346 [Glycine max]
          Length = 320

 Score =  101 bits (241), Expect = 6e-22
 Identities = 45/73 (61%), Positives = 59/73 (80%)
 Frame = -2

Query: 671 QALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTI 492
           Q L+IPTKI+KGT+EII  V ++K GDKVG+SEA LL  L I PFSYGLVV+ VYD+G++
Sbjct: 141 QVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSV 200

Query: 491 FAPEILDIKPEDL 453
           F+PE+LD+  + L
Sbjct: 201 FSPEVLDLTEDQL 213



 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 26/62 (41%), Positives = 38/62 (61%)
 Frame = -3

Query: 445 KFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXXXXXXXXXXXXXXXIKEFIKDPS 266
           KF +G++ V +L+LA+ YPT+A+APH   N +KN L               +KE++KDPS
Sbjct: 216 KFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIAVATEYTFPQAEKVKEYLKDPS 275

Query: 265 KF 260
           KF
Sbjct: 276 KF 277


>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 
          Length = 317

 Score =  100 bits (239), Expect = 1e-21
 Identities = 45/73 (61%), Positives = 59/73 (80%)
 Frame = -2

Query: 671 QALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTI 492
           Q L+IPTKI+KGT+EII  V ++K GDKVG+SEA LL  L I PFSYGLVV+ VYD+G++
Sbjct: 142 QVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVESVYDNGSV 201

Query: 491 FAPEILDIKPEDL 453
           F PE+L++  +DL
Sbjct: 202 FNPEVLNLTEDDL 214



 Score = 64.9 bits (151), Expect = 5e-11
 Identities = 30/62 (48%), Positives = 39/62 (62%)
 Frame = -3

Query: 445 KFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXXXXXXXXXXXXXXXIKEFIKDPS 266
           KF AGV+ + ALSLAI YPT+A+APH   N +KN+L               +KEF+KDP+
Sbjct: 217 KFAAGVSMITALSLAISYPTVAAAPHMFLNAYKNVLAVALATEYSFPQAENVKEFLKDPT 276

Query: 265 KF 260
           KF
Sbjct: 277 KF 278


>At1g25260.1 68414.m03134 acidic ribosomal protein P0-related
           contains similarity to 60S acidic ribosomal protein
           GI:5815233 from [Homo sapiens]
          Length = 235

 Score = 34.7 bits (76), Expect = 0.057
 Identities = 16/73 (21%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
 Frame = -2

Query: 665 LSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNML--NISPFSYGLVVKQVYDSGTI 492
           L +P +++KGT+E++ D  + + G ++    A +L +L   ++ F   L+ +       +
Sbjct: 157 LEMPVRLNKGTVELVADFVVCEEGKQLSPKSAHILRLLRMKMATFKLNLLCRWSPSDFEL 216

Query: 491 FAPEILDIKPEDL 453
           +  ++ ++  EDL
Sbjct: 217 YREDLSELYREDL 229


>At5g12430.1 68418.m01461 DNAJ heat shock N-terminal
           domain-containing protein similarity to
           TETRATRICOPEPTIDE REPEAT PROTEIN 2 , human,
           SWISSPROT:TTC2_HUMAN; contains Pfam profiles PF00226:
           DnaJ domain, PF00515: TPR Domain
          Length = 1165

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +1

Query: 481 SGAKIVPESYTCLTTRPYENGEMFNMLRRVASEAPTLSPGFKMCTSLMISIVPFEILVGI 660
           +G+   PE+Y+ +   PYE  E   + R  +++ P  +P +     L+ +    EI  G 
Sbjct: 371 NGSNEAPEAYSPMDISPYEETE---VCREFSADIPPTAPNYLFDAELVAATERMEINEGD 427

Query: 661 E 663
           E
Sbjct: 428 E 428


>At2g22830.1 68415.m02711 squalene monooxygenase, putative /
           squalene epoxidase, putative similar to SP|O65404 (SE
           1,1), SP|O65402 (SE 1,2), SP|O65403 (SE 2)
          Length = 585

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -3

Query: 658 SLPRFQRVLLKSSTMYTS*SPVTRLELLKPPFST 557
           +LPRFQ  L +SS +YT+  P +R  L    F+T
Sbjct: 8   NLPRFQSTL-RSSLLYTNHRPSSRFSLSTRRFTT 40


>At5g56870.1 68418.m07097 beta-galactosidase, putative / lactase,
           putative similar to beta-galactosidase precursor
           GI:3869280 from [Carica papaya]
          Length = 724

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -3

Query: 472 TSNQKISRAKFQAGVANVAALSLAIGYPTIAS 377
           T +QKI   K  AGV  +A LS+A+G P + +
Sbjct: 524 TFSQKI---KLHAGVNKIALLSVAVGLPNVGT 552


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,905,591
Number of Sequences: 28952
Number of extensions: 222958
Number of successful extensions: 513
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)