Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0246
         (511 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    27   1.6  
SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces pombe...    26   2.9  
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    26   2.9  
SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|...    26   3.8  
SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       25   5.0  

>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 14/58 (24%), Positives = 29/58 (50%)
 Frame = +2

Query: 143 WYVFVNNIF**ILLSPLICYFHLDPKNL*IKQTSLYLVLFKQNHSPIIQIKMVPHLIK 316
           W++F NN+   + ++ +   F     +L ++Q  +YL    +N++P      +  LIK
Sbjct: 727 WFLFSNNVVLSMFIAVIQVNFAPSESDLKMEQLKMYLARLLRNYNPFQASLTLNALIK 784


>SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 270

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 8/34 (23%), Positives = 20/34 (58%)
 Frame = -3

Query: 473 E*HPHMESNSVLRL*MALVMEKRLMWIILINILC 372
           E H  ++ ++++ L    + EK+  W++  +I+C
Sbjct: 120 ELHQTLQQSNLINLQSLCIFEKKAAWVLYADIIC 153


>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -2

Query: 441 FEVIDGLGNGKASNVDYS 388
           F ++DG G+G A++ DYS
Sbjct: 168 FTLVDGSGSGSATHTDYS 185


>SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = -3

Query: 464 PHMESNSVLRL*MALVMEKRLMWIILINILCPSISFNS 351
           PH     ++   +AL+ +  L+W++L  +LC  ++ +S
Sbjct: 213 PHYLGEIIVYTGIALIAQHWLIWLVLGWVLCNMVAISS 250


>SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 111

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 12 LVNCCVEVCIIFFNKY 59
          +V CC  +C + F+KY
Sbjct: 50 IVECCASLCSLIFSKY 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,030,757
Number of Sequences: 5004
Number of extensions: 38129
Number of successful extensions: 75
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)