Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0246
         (511 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    21   5.6  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    21   5.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.4  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   9.8  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   9.8  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 294 KWFPTLSSNISIKSKY 341
           ++FPT + N + K KY
Sbjct: 82  RYFPTQALNFAFKDKY 97


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 294 KWFPTLSSNISIKSKY 341
           ++FPT + N + K KY
Sbjct: 82  RYFPTQALNFAFKDKY 97


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -1

Query: 67  YPTYLLKNIIQTSTQQLTNNEL 2
           Y + + ++II++  +QLT NE+
Sbjct: 509 YASLIRQSIIESPDKQLTLNEI 530


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 15  VNCCVEVCIIFFNKYVGYILMSLIS 89
           + C   VC+ F++  V  IL+  I+
Sbjct: 385 IQCLTVVCLAFWSFIVSTILLWFIN 409


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 427 IYNLKTEFDSICG 465
           + NL  +FDS CG
Sbjct: 516 LQNLYEQFDSFCG 528


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,915
Number of Sequences: 438
Number of extensions: 2657
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)