Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0246
         (511 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g15090.1 68415.m01720 fatty acid elongase, putative similar  ...    27   9.7  
At1g63020.1 68414.m07117 DNA-directed RNA polymerase alpha subun...    27   9.7  

>At2g15090.1 68415.m01720 fatty acid elongase, putative similar  to
           fatty acid elongase 1 [GI:881615]
          Length = 481

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 186 LL*FVIFIWILRIFE*NKPVYI 251
           LL  V+F+WIL +    KPVY+
Sbjct: 50  LLFLVVFVWILYMLTRPKPVYL 71


>At1g63020.1 68414.m07117 DNA-directed RNA polymerase alpha subunit
            family protein low similarity to RNA polymerase IIA
            largest subunit [Trypanosoma brucei] GI:162215; contains
            InterPro accession IPR000722: RNA polymerase, alpha
            subunit
          Length = 1453

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 182  LSPLICYFHLDPKNL*IKQTSLYLVLFKQN 271
            LSP +C+FH+  K L  KQ S   V+   N
Sbjct: 977  LSPWVCHFHISEKVLKRKQLSAESVVSSLN 1006


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,972,133
Number of Sequences: 28952
Number of extensions: 178964
Number of successful extensions: 280
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)