Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0244
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)             140   7e-34
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)                 37   0.013
SB_3235| Best HMM Match : Laminin_EGF (HMM E-Value=3.6e-13)            34   0.12 
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)                 33   0.22 
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)                 31   0.66 
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)                       31   0.66 
SB_23195| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-10)              30   1.5  
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)                 30   2.0  
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)                 29   2.7  
SB_59706| Best HMM Match : Trypsin (HMM E-Value=0.16)                  29   2.7  
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)             29   3.5  
SB_50855| Best HMM Match : Ras (HMM E-Value=0)                         29   4.7  
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_30873| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_59350| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_22169| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)                 28   8.1  

>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1291

 Score =  140 bits (340), Expect = 7e-34
 Identities = 76/144 (52%), Positives = 98/144 (68%), Gaps = 18/144 (12%)
 Frame = +2

Query: 257 WDVPPPGFEHITPLQYKAMQAAGQI---------PANIVADT-------PQAAVPVV--G 382
           WD+PP G+E ++ ++YK M+A GQI         PA  ++ T       P +AV  +  G
Sbjct: 496 WDIPPLGYEQVSAMEYKTMRANGQIAAPAIGTVIPATALSATQSGASVLPASAVASLPHG 555

Query: 383 STITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLE 562
           S +TRQARRLYVGNIPFGVTE   +EFFN +M  + L  A GNPV+A QIN ++NFAF+E
Sbjct: 556 SQMTRQARRLYVGNIPFGVTENLMIEFFNAKMKEAKLNTAPGNPVIAAQINTEQNFAFIE 615

Query: 563 FRSIDETTQAMAFDGINFKGQKLK 634
            RS++ETTQAMAFDGI  +GQ LK
Sbjct: 616 LRSVEETTQAMAFDGIILQGQALK 639



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 17/25 (68%), Positives = 23/25 (92%), Gaps = 1/25 (4%)
 Frame = +3

Query: 609 LILKGKSLKIRRPHDYQPMPG-TEN 680
           +IL+G++LKIRRP DYQP+PG +EN
Sbjct: 631 IILQGQALKIRRPKDYQPIPGMSEN 655


>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
          Length = 407

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 19/77 (24%), Positives = 36/77 (46%)
 Frame = +2

Query: 404 RRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDET 583
           R +++GN+PF + EE   E F    ++  +           +  + K F ++ F S D  
Sbjct: 56  RSVFIGNLPFDIEEEPLRELFTTCGNVESVRLIRDR-----KTGIGKGFGYVLFESKDAV 110

Query: 584 TQAMAFDGINFKGQKLK 634
             A+  +   FKG+K++
Sbjct: 111 VFALKMNNAEFKGRKIR 127


>SB_3235| Best HMM Match : Laminin_EGF (HMM E-Value=3.6e-13)
          Length = 170

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 21/77 (27%), Positives = 29/77 (37%)
 Frame = +1

Query: 286 YHAITIQGDASGGSDSCQYCRRHTTSCRAGGGFDYNTSSAKVICRQHTLWRHRRRNNGVF 465
           +H + + GD   G      C  HT  C A  G  YN       C+ +T   H    +  F
Sbjct: 94  HHRVNVSGDPFYGKCIPCNCNNHTNDCYADTGLCYN-------CKHNTAGEHCELCDDGF 146

Query: 466 QSTNASIGPGPGRRQPC 516
               A   PG  ++ PC
Sbjct: 147 YGNAADGTPGDCKQCPC 163


>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
          Length = 392

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 2/107 (1%)
 Frame = +2

Query: 335 ANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNP 514
           A  +A   QA          R  R ++VGNIP+  +EE+  E F++   +          
Sbjct: 2   ATALAXIAQAQQKQSSGAADRSLRSVFVGNIPYEASEEQLKEIFSEVGPVISF-----RL 56

Query: 515 VLACQINLDKNFAFLEFRSIDETTQAMA-FDGINFKGQKLK-DSTST 649
           V   +    K + F E++  +    AM   +G    G+ L+ DS ++
Sbjct: 57  VFDRETGKPKGYGFCEYKDQETALSAMRNLNGYELNGRALRVDSAAS 103


>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
          Length = 1118

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = +2

Query: 407 RLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 586
           R+Y+G +P+G TE++   FF     L               INL  N+ F+EF    +  
Sbjct: 4   RVYLGRLPYGTTEDDVRRFFRSYGRLR-------------DINLKNNYGFVEFEDDRDAD 50

Query: 587 QAM 595
            A+
Sbjct: 51  DAV 53


>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 514

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
 Frame = +2

Query: 407 RLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 586
           RLYVG++ F +TE      F       G   +    +   + N  K + F++FR  +   
Sbjct: 243 RLYVGSLHFNITEAMVKAVFEP----FGTVDSV-QLIYDSETNRSKGYGFVQFREAEAAK 297

Query: 587 QAM-AFDGINFKGQKLK 634
           +AM   +G    G+ LK
Sbjct: 298 RAMEQMNGFELAGRPLK 314


>SB_23195| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-10)
          Length = 466

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 256 LGCTAAGIRAYHAITIQGDASGGSDSCQYCRRHTTSC 366
           L   +  I+ YH   +  D S  SDSC+ CR  T  C
Sbjct: 84  LNTVSTRIKRYH---VDVDVSSSSDSCRICRDSTAGC 117


>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
          Length = 507

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
 Frame = +2

Query: 407 RLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 586
           R+YVGN+P  V E++  + F +  H++ +        L  +      FAF+EF    +  
Sbjct: 262 RVYVGNLPQDVREKDLHDIFYKYGHIADVD-------LKNRRGAGPPFAFVEFEDPRDAE 314

Query: 587 QAM-AFDGINFKGQKLK 634
            A+   DG  F G +++
Sbjct: 315 DAVKGRDGHEFDGYRIR 331


>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
          Length = 496

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
 Frame = +2

Query: 398 QARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLD--KNFAFLEFRS 571
           + R+++VG +     EE+  E+FN     +G+ +     +   + N    + FAF+ F +
Sbjct: 137 KTRKIFVGGLASTTVEEDIKEYFNSLCRKNGMGEVIDVDLKRDRDNPKRIRGFAFVTFDN 196

Query: 572 --IDETTQAMAFDGINFKGQKLK 634
             I E   AM +  I  K  ++K
Sbjct: 197 DEIVEKVCAMKYHEIRMKQCEVK 219


>SB_59706| Best HMM Match : Trypsin (HMM E-Value=0.16)
          Length = 91

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +1

Query: 262 CTAAGIRAYHAITIQGDASGGSDSCQYCRRHTTSCRAGGGFD 387
           C+ A  R + ++   G ASGG DSCQ        C   G F+
Sbjct: 28  CSRAYSRLHESMVCAGRASGGIDSCQGDSGGPMVCEYNGKFN 69


>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
          Length = 1531

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +2

Query: 389 ITRQARRLYVGNIPFGVTEEETMEFFNQ 472
           + R+ R L+VGN+P  + EE+ ++ F +
Sbjct: 1   MVRETRHLWVGNLPENIREEDIVKHFTR 28


>SB_50855| Best HMM Match : Ras (HMM E-Value=0)
          Length = 733

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 413 YVGNIPFGVTEEETMEFFNQQMHLSG 490
           ++GN+P+ V  E+ +EFF+    L G
Sbjct: 280 FLGNLPYDVEREDILEFFSSVKSLRG 305


>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
 Frame = +2

Query: 407 RLYVGNIPFGVTEEETMEFFN-QQMHLSG--LAQAAGNPVLACQINLDKNFAFLEFRS-I 574
           ++Y GN+PF +T++E    F  + + ++   + +   N     Q    + F F+ F +  
Sbjct: 51  KVYAGNLPFKLTQDELKAVFEAESLTVTDVLIVKEPRNEFYQQQEPRSRGFGFVTFANPE 110

Query: 575 DETTQAMAFDGINFKGQKLKDSTS 646
           D  T   + +G   +G+ LK + S
Sbjct: 111 DAQTAVKSLNGKEVQGRTLKIAPS 134


>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 610

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 21/65 (32%), Positives = 36/65 (55%)
 Frame = +2

Query: 377 VGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAF 556
           +G  I+    RL+VG+IP   +++E +E F++    +GL       + A Q   ++ FAF
Sbjct: 224 LGVCISVANSRLFVGSIPKTKSKQEILEEFSKV--TNGLDDVIVY-LSADQKGKNRGFAF 280

Query: 557 LEFRS 571
           LE+ S
Sbjct: 281 LEYES 285


>SB_30873| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 121

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = +2

Query: 527 QINLDKNFAFLEFRSIDETTQAMAFDGINFKGQKLKDST 643
           +++ +++FAF++ + IDET    +   +N KG  L  +T
Sbjct: 81  ELSKEEDFAFIDNKHIDETCLNRSHLHLNLKGNALSGNT 119


>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 732

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 20/94 (21%), Positives = 46/94 (48%)
 Frame = +2

Query: 353 TPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQI 532
           TP+  VP       ++   +++GN+ F   +EET+  F ++  LS   +      +  Q 
Sbjct: 169 TPKKTVPA------KEEMSVFLGNLSFD-ADEETLAAFFEEKGLSATCR------VITQE 215

Query: 533 NLDKNFAFLEFRSIDETTQAMAFDGINFKGQKLK 634
              + F + +F S ++  +A+  +G +  G++++
Sbjct: 216 GRSRGFGYADFTSKEDYNKALELNGEDCCGREIR 249


>SB_59350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 987

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/52 (25%), Positives = 22/52 (42%)
 Frame = +1

Query: 355 TTSCRAGGGFDYNTSSAKVICRQHTLWRHRRRNNGVFQSTNASIGPGPGRRQ 510
           T + R  G   +N    ++ C Q   + HR+R + V+       G G  + Q
Sbjct: 71  TVAARRSGSPIFNFKEHRLFCGQPAKYNHRKRGSDVYPIPKGHDGEGEEKYQ 122


>SB_22169| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 285

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = +1

Query: 277 IRAYHAITIQGDASGGSDSCQYCRRHTTSCRAGGGFDYNTSSAK 408
           I+  H ++ + + S  S  C  CR  T  C++      N S+++
Sbjct: 61  IKVVHTLSARPELSHCSGVCNICRHRTQECKSDDNKSLNGSNSR 104


>SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)
          Length = 67

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +2

Query: 401 ARRLYVGNIPFGVTEEETMEFF 466
           + R+Y+G +P+G  E++  +FF
Sbjct: 2   SNRVYLGRLPYGTREDDVKKFF 23


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,594,243
Number of Sequences: 59808
Number of extensions: 444340
Number of successful extensions: 1214
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1212
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)