Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0244
(686 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L23404-1|AAA03548.1| 416|Drosophila melanogaster RNA binding pr... 253 2e-67
AY069320-1|AAL39465.1| 416|Drosophila melanogaster LD03714p pro... 253 2e-67
AE014298-2376|AAF48596.1| 416|Drosophila melanogaster CG9998-PA... 253 2e-67
AE013599-3557|AAF46969.1| 449|Drosophila melanogaster CG3162-PA... 159 2e-39
AY075220-1|AAL68087.1| 449|Drosophila melanogaster AT16577p pro... 157 1e-38
M33496-2|AAA03215.1| 698|Drosophila melanogaster protein ( D.me... 36 0.069
M33496-1|AAA03214.1| 700|Drosophila melanogaster protein ( D.me... 36 0.069
AY119651-1|AAM50305.1| 700|Drosophila melanogaster RE58280p pro... 36 0.069
AE014298-2380|AAX52501.1| 698|Drosophila melanogaster CG4211-PC... 36 0.069
AE014298-2379|AAF48597.2| 700|Drosophila melanogaster CG4211-PA... 36 0.069
AE014298-2378|AAN09398.1| 742|Drosophila melanogaster CG4211-PB... 36 0.069
X55902-1|CAA39395.1| 700|Drosophila melanogaster Bj6 protein pr... 35 0.091
L34934-1|AAA73522.1| 224|Drosophila melanogaster RNA binding pr... 34 0.16
AY075519-1|AAL68327.1| 224|Drosophila melanogaster RE69521p pro... 34 0.16
AY070631-1|AAL48102.1| 224|Drosophila melanogaster RE74211p pro... 34 0.16
AF116341-1|AAF00976.1| 224|Drosophila melanogaster poly(A)-bind... 34 0.16
AE013599-599|AAM68852.1| 224|Drosophila melanogaster CG2163-PB,... 34 0.16
AE013599-598|AAF59127.1| 224|Drosophila melanogaster CG2163-PA,... 34 0.16
BT004860-1|AAO45216.1| 437|Drosophila melanogaster RE27227p pro... 34 0.21
AF170082-1|AAD47839.1| 419|Drosophila melanogaster cleavage sti... 34 0.21
AE014297-2555|AAF55577.2| 419|Drosophila melanogaster CG7697-PA... 34 0.21
AE014297-773|AAF54259.1| 91|Drosophila melanogaster CG8021-PA ... 34 0.21
AY058477-1|AAL13706.1| 529|Drosophila melanogaster GH28335p pro... 32 0.64
AE014297-2865|AAN13835.1| 529|Drosophila melanogaster CG17838-P... 32 0.64
AY061516-1|AAL29064.1| 418|Drosophila melanogaster LD46870p pro... 29 4.5
AE014297-14|AAF52166.2| 418|Drosophila melanogaster CG14641-PA ... 29 4.5
AY051919-1|AAK93343.1| 255|Drosophila melanogaster LD40489p pro... 29 6.0
AF234157-1|AAF60294.1| 255|Drosophila melanogaster SR family sp... 29 6.0
AF232773-1|AAF43413.1| 255|Drosophila melanogaster SR family sp... 29 6.0
AE014297-2188|AAF55300.1| 255|Drosophila melanogaster CG6987-PA... 29 6.0
AY069521-1|AAL39666.2| 958|Drosophila melanogaster LD23810p pro... 29 7.9
AY051860-1|AAK93284.1| 594|Drosophila melanogaster LD35730p pro... 29 7.9
AE014298-3112|AAN09672.1| 90|Drosophila melanogaster CG33714-P... 29 7.9
AE014298-3111|AAN09673.1| 90|Drosophila melanogaster CG33714-P... 29 7.9
AE014134-1228|AAN10619.1| 287|Drosophila melanogaster CG11266-P... 29 7.9
AE014134-1227|AAN10618.1| 287|Drosophila melanogaster CG11266-P... 29 7.9
AE014134-1226|AAN10615.2| 287|Drosophila melanogaster CG11266-P... 29 7.9
AE014134-1225|AAN10617.1| 287|Drosophila melanogaster CG11266-P... 29 7.9
AE014134-1224|AAN10616.1| 287|Drosophila melanogaster CG11266-P... 29 7.9
AE014134-1223|AAN10614.1| 594|Drosophila melanogaster CG11266-P... 29 7.9
AE014134-1222|AAF52478.1| 594|Drosophila melanogaster CG11266-P... 29 7.9
AE013599-3105|AAF46654.1| 957|Drosophila melanogaster CG9346-PA... 29 7.9
>L23404-1|AAA03548.1| 416|Drosophila melanogaster RNA binding
protein protein.
Length = 416
Score = 253 bits (619), Expect = 2e-67
Identities = 117/128 (91%), Positives = 122/128 (95%)
Frame = +2
Query: 251 LYWDVPPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIP 430
LYWDVPPPGFEHITP+QYKAMQA+GQIPA++V DTPQ AVPVVGSTITRQARRLYVGNIP
Sbjct: 42 LYWDVPPPGFEHITPMQYKAMQASGQIPASVVPDTPQTAVPVVGSTITRQARRLYVGNIP 101
Query: 431 FGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGI 610
FGVTEEE MEFFNQQMHL GLAQAAG+PVLACQINLDKNFAFLEFRSIDETTQAMAFDGI
Sbjct: 102 FGVTEEEMMEFFNQQMHLVGLAQAAGSPVLACQINLDKNFAFLEFRSIDETTQAMAFDGI 161
Query: 611 NFKGQKLK 634
N KGQ LK
Sbjct: 162 NLKGQSLK 169
Score = 47.6 bits (108), Expect = 2e-05
Identities = 21/25 (84%), Positives = 23/25 (92%), Gaps = 1/25 (4%)
Frame = +3
Query: 615 LKGKSLKIRRPHDYQPMPG-TENPA 686
LKG+SLKIRRPHDYQPMPG T+ PA
Sbjct: 163 LKGQSLKIRRPHDYQPMPGITDTPA 187
>AY069320-1|AAL39465.1| 416|Drosophila melanogaster LD03714p
protein.
Length = 416
Score = 253 bits (619), Expect = 2e-67
Identities = 117/128 (91%), Positives = 122/128 (95%)
Frame = +2
Query: 251 LYWDVPPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIP 430
LYWDVPPPGFEHITP+QYKAMQA+GQIPA++V DTPQ AVPVVGSTITRQARRLYVGNIP
Sbjct: 42 LYWDVPPPGFEHITPMQYKAMQASGQIPASVVPDTPQTAVPVVGSTITRQARRLYVGNIP 101
Query: 431 FGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGI 610
FGVTEEE MEFFNQQMHL GLAQAAG+PVLACQINLDKNFAFLEFRSIDETTQAMAFDGI
Sbjct: 102 FGVTEEEMMEFFNQQMHLVGLAQAAGSPVLACQINLDKNFAFLEFRSIDETTQAMAFDGI 161
Query: 611 NFKGQKLK 634
N KGQ LK
Sbjct: 162 NLKGQSLK 169
Score = 47.6 bits (108), Expect = 2e-05
Identities = 21/25 (84%), Positives = 23/25 (92%), Gaps = 1/25 (4%)
Frame = +3
Query: 615 LKGKSLKIRRPHDYQPMPG-TENPA 686
LKG+SLKIRRPHDYQPMPG T+ PA
Sbjct: 163 LKGQSLKIRRPHDYQPMPGITDTPA 187
>AE014298-2376|AAF48596.1| 416|Drosophila melanogaster CG9998-PA
protein.
Length = 416
Score = 253 bits (619), Expect = 2e-67
Identities = 117/128 (91%), Positives = 122/128 (95%)
Frame = +2
Query: 251 LYWDVPPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIP 430
LYWDVPPPGFEHITP+QYKAMQA+GQIPA++V DTPQ AVPVVGSTITRQARRLYVGNIP
Sbjct: 42 LYWDVPPPGFEHITPMQYKAMQASGQIPASVVPDTPQTAVPVVGSTITRQARRLYVGNIP 101
Query: 431 FGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGI 610
FGVTEEE MEFFNQQMHL GLAQAAG+PVLACQINLDKNFAFLEFRSIDETTQAMAFDGI
Sbjct: 102 FGVTEEEMMEFFNQQMHLVGLAQAAGSPVLACQINLDKNFAFLEFRSIDETTQAMAFDGI 161
Query: 611 NFKGQKLK 634
N KGQ LK
Sbjct: 162 NLKGQSLK 169
Score = 47.6 bits (108), Expect = 2e-05
Identities = 21/25 (84%), Positives = 23/25 (92%), Gaps = 1/25 (4%)
Frame = +3
Query: 615 LKGKSLKIRRPHDYQPMPG-TENPA 686
LKG+SLKIRRPHDYQPMPG T+ PA
Sbjct: 163 LKGQSLKIRRPHDYQPMPGITDTPA 187
>AE013599-3557|AAF46969.1| 449|Drosophila melanogaster CG3162-PA
protein.
Length = 449
Score = 159 bits (387), Expect = 2e-39
Identities = 77/131 (58%), Positives = 93/131 (70%), Gaps = 5/131 (3%)
Frame = +2
Query: 257 WDVPPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFG 436
WD+PP G+ H+TP QYKAM A+GQI + I++D S ITRQARRLYVGNIPFG
Sbjct: 62 WDIPPEGYNHLTPQQYKAMLASGQIASRILSDGVHGGESAAISMITRQARRLYVGNIPFG 121
Query: 437 VTEEETMEFFNQQMHLSGLAQAA-----GNPVLACQINLDKNFAFLEFRSIDETTQAMAF 601
VT+EE M+FFN Q+ G + GN VL CQ NL+KNFAFLEFRSIDE +QA+ F
Sbjct: 122 VTDEEMMQFFNHQIMALGFEAKSSHYMDGNAVLTCQTNLEKNFAFLEFRSIDEASQALNF 181
Query: 602 DGINFKGQKLK 634
DG+ F+GQ LK
Sbjct: 182 DGMVFRGQTLK 192
Score = 38.7 bits (86), Expect = 0.007
Identities = 13/20 (65%), Positives = 19/20 (95%)
Frame = +3
Query: 609 LILKGKSLKIRRPHDYQPMP 668
++ +G++LKIRRPHDYQP+P
Sbjct: 184 MVFRGQTLKIRRPHDYQPVP 203
>AY075220-1|AAL68087.1| 449|Drosophila melanogaster AT16577p
protein.
Length = 449
Score = 157 bits (382), Expect = 1e-38
Identities = 76/131 (58%), Positives = 93/131 (70%), Gaps = 5/131 (3%)
Frame = +2
Query: 257 WDVPPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFG 436
WD+PP G+ H+TP Q+KAM A+GQI + I++D S ITRQARRLYVGNIPFG
Sbjct: 62 WDIPPEGYNHLTPQQHKAMLASGQIASRILSDGVHGGESAAISMITRQARRLYVGNIPFG 121
Query: 437 VTEEETMEFFNQQMHLSGLAQAA-----GNPVLACQINLDKNFAFLEFRSIDETTQAMAF 601
VT+EE M+FFN Q+ G + GN VL CQ NL+KNFAFLEFRSIDE +QA+ F
Sbjct: 122 VTDEEMMQFFNHQIMALGFEAKSSHYMDGNAVLTCQTNLEKNFAFLEFRSIDEASQALNF 181
Query: 602 DGINFKGQKLK 634
DG+ F+GQ LK
Sbjct: 182 DGMVFRGQTLK 192
Score = 38.7 bits (86), Expect = 0.007
Identities = 13/20 (65%), Positives = 19/20 (95%)
Frame = +3
Query: 609 LILKGKSLKIRRPHDYQPMP 668
++ +G++LKIRRPHDYQP+P
Sbjct: 184 MVFRGQTLKIRRPHDYQPVP 203
>M33496-2|AAA03215.1| 698|Drosophila melanogaster protein (
D.melanogaster no-on-transient A gene product, complete
cds. ).
Length = 698
Score = 35.5 bits (78), Expect = 0.069
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = +2
Query: 407 RLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 586
RLYVGN+ +T++E E F +S + NLDKNF FL+
Sbjct: 303 RLYVGNLTNDITDDELREMFKPYGEISEIFS-----------NLDKNFTFLKVDYHPNAE 351
Query: 587 QA-MAFDGINFKGQKLK 634
+A A DG KG++L+
Sbjct: 352 KAKRALDGSMRKGRQLR 368
>M33496-1|AAA03214.1| 700|Drosophila melanogaster protein (
D.melanogaster no-on-transient A gene product, complete
cds. ).
Length = 700
Score = 35.5 bits (78), Expect = 0.069
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = +2
Query: 407 RLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 586
RLYVGN+ +T++E E F +S + NLDKNF FL+
Sbjct: 303 RLYVGNLTNDITDDELREMFKPYGEISEIFS-----------NLDKNFTFLKVDYHPNAE 351
Query: 587 QA-MAFDGINFKGQKLK 634
+A A DG KG++L+
Sbjct: 352 KAKRALDGSMRKGRQLR 368
>AY119651-1|AAM50305.1| 700|Drosophila melanogaster RE58280p
protein.
Length = 700
Score = 35.5 bits (78), Expect = 0.069
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = +2
Query: 407 RLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 586
RLYVGN+ +T++E E F +S + NLDKNF FL+
Sbjct: 303 RLYVGNLTNDITDDELREMFKPYGEISEIFS-----------NLDKNFTFLKVDYHPNAE 351
Query: 587 QA-MAFDGINFKGQKLK 634
+A A DG KG++L+
Sbjct: 352 KAKRALDGSMRKGRQLR 368
>AE014298-2380|AAX52501.1| 698|Drosophila melanogaster CG4211-PC,
isoform C protein.
Length = 698
Score = 35.5 bits (78), Expect = 0.069
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = +2
Query: 407 RLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 586
RLYVGN+ +T++E E F +S + NLDKNF FL+
Sbjct: 303 RLYVGNLTNDITDDELREMFKPYGEISEIFS-----------NLDKNFTFLKVDYHPNAE 351
Query: 587 QA-MAFDGINFKGQKLK 634
+A A DG KG++L+
Sbjct: 352 KAKRALDGSMRKGRQLR 368
>AE014298-2379|AAF48597.2| 700|Drosophila melanogaster CG4211-PA,
isoform A protein.
Length = 700
Score = 35.5 bits (78), Expect = 0.069
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = +2
Query: 407 RLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 586
RLYVGN+ +T++E E F +S + NLDKNF FL+
Sbjct: 303 RLYVGNLTNDITDDELREMFKPYGEISEIFS-----------NLDKNFTFLKVDYHPNAE 351
Query: 587 QA-MAFDGINFKGQKLK 634
+A A DG KG++L+
Sbjct: 352 KAKRALDGSMRKGRQLR 368
>AE014298-2378|AAN09398.1| 742|Drosophila melanogaster CG4211-PB,
isoform B protein.
Length = 742
Score = 35.5 bits (78), Expect = 0.069
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = +2
Query: 407 RLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 586
RLYVGN+ +T++E E F +S + NLDKNF FL+
Sbjct: 303 RLYVGNLTNDITDDELREMFKPYGEISEIFS-----------NLDKNFTFLKVDYHPNAE 351
Query: 587 QA-MAFDGINFKGQKLK 634
+A A DG KG++L+
Sbjct: 352 KAKRALDGSMRKGRQLR 368
>X55902-1|CAA39395.1| 700|Drosophila melanogaster Bj6 protein
protein.
Length = 700
Score = 35.1 bits (77), Expect = 0.091
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = +2
Query: 407 RLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 586
RLYVGN+ +T++E E F +S + NLDKNF FL+
Sbjct: 303 RLYVGNLTNDITDDELREMFKPYGEISEIFS-----------NLDKNFTFLKVDYHPNRE 351
Query: 587 QA-MAFDGINFKGQKLK 634
+A A DG KG++L+
Sbjct: 352 KAKRALDGSMRKGRQLR 368
>L34934-1|AAA73522.1| 224|Drosophila melanogaster RNA binding
protein protein.
Length = 224
Score = 34.3 bits (75), Expect = 0.16
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +2
Query: 404 RRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQIN-LDKNFAFLEFRSIDE 580
R +YVGN+ +G + EE + H G +L + + K FA++EF S +
Sbjct: 96 RSVYVGNVDYGASAEEL------EAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEF 149
Query: 581 TTQAMAFDGINFKGQKLK 634
A+A + F+G+++K
Sbjct: 150 VETALAMNETLFRGRQIK 167
>AY075519-1|AAL68327.1| 224|Drosophila melanogaster RE69521p
protein.
Length = 224
Score = 34.3 bits (75), Expect = 0.16
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +2
Query: 404 RRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQIN-LDKNFAFLEFRSIDE 580
R +YVGN+ +G + EE + H G +L + + K FA++EF S +
Sbjct: 96 RSVYVGNVDYGASAEEL------EAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEF 149
Query: 581 TTQAMAFDGINFKGQKLK 634
A+A + F+G+++K
Sbjct: 150 VETALAMNETLFRGRQIK 167
>AY070631-1|AAL48102.1| 224|Drosophila melanogaster RE74211p
protein.
Length = 224
Score = 34.3 bits (75), Expect = 0.16
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +2
Query: 404 RRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQIN-LDKNFAFLEFRSIDE 580
R +YVGN+ +G + EE + H G +L + + K FA++EF S +
Sbjct: 96 RSVYVGNVDYGASAEEL------EAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEF 149
Query: 581 TTQAMAFDGINFKGQKLK 634
A+A + F+G+++K
Sbjct: 150 VETALAMNETLFRGRQIK 167
>AF116341-1|AAF00976.1| 224|Drosophila melanogaster poly(A)-binding
protein II protein.
Length = 224
Score = 34.3 bits (75), Expect = 0.16
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +2
Query: 404 RRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQIN-LDKNFAFLEFRSIDE 580
R +YVGN+ +G + EE + H G +L + + K FA++EF S +
Sbjct: 96 RSVYVGNVDYGASAEEL------EAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEF 149
Query: 581 TTQAMAFDGINFKGQKLK 634
A+A + F+G+++K
Sbjct: 150 VETALAMNETLFRGRQIK 167
>AE013599-599|AAM68852.1| 224|Drosophila melanogaster CG2163-PB,
isoform B protein.
Length = 224
Score = 34.3 bits (75), Expect = 0.16
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +2
Query: 404 RRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQIN-LDKNFAFLEFRSIDE 580
R +YVGN+ +G + EE + H G +L + + K FA++EF S +
Sbjct: 96 RSVYVGNVDYGASAEEL------EAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEF 149
Query: 581 TTQAMAFDGINFKGQKLK 634
A+A + F+G+++K
Sbjct: 150 VETALAMNETLFRGRQIK 167
>AE013599-598|AAF59127.1| 224|Drosophila melanogaster CG2163-PA,
isoform A protein.
Length = 224
Score = 34.3 bits (75), Expect = 0.16
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +2
Query: 404 RRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQIN-LDKNFAFLEFRSIDE 580
R +YVGN+ +G + EE + H G +L + + K FA++EF S +
Sbjct: 96 RSVYVGNVDYGASAEEL------EAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEF 149
Query: 581 TTQAMAFDGINFKGQKLK 634
A+A + F+G+++K
Sbjct: 150 VETALAMNETLFRGRQIK 167
>BT004860-1|AAO45216.1| 437|Drosophila melanogaster RE27227p
protein.
Length = 437
Score = 33.9 bits (74), Expect = 0.21
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = +2
Query: 383 STITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLE 562
S + + R ++VGNIP+ TEE+ E F++ + L V + K F F E
Sbjct: 9 SIMDKSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSL-----KLVFDRESGKPKGFGFCE 63
Query: 563 FRSIDETTQAMA-FDGINFKGQKLK 634
++ + AM +G G+ L+
Sbjct: 64 YKDQETALSAMRNLNGYEIGGRTLR 88
>AF170082-1|AAD47839.1| 419|Drosophila melanogaster cleavage
stimulation factor 64kilodalton subunit protein.
Length = 419
Score = 33.9 bits (74), Expect = 0.21
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = +2
Query: 383 STITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLE 562
S + + R ++VGNIP+ TEE+ E F++ + L V + K F F E
Sbjct: 9 SIMDKSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSL-----KLVFDRESGKPKGFGFCE 63
Query: 563 FRSIDETTQAMA-FDGINFKGQKLK 634
++ + AM +G G+ L+
Sbjct: 64 YKDQETALSAMRNLNGYEIGGRTLR 88
>AE014297-2555|AAF55577.2| 419|Drosophila melanogaster CG7697-PA
protein.
Length = 419
Score = 33.9 bits (74), Expect = 0.21
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = +2
Query: 383 STITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLE 562
S + + R ++VGNIP+ TEE+ E F++ + L V + K F F E
Sbjct: 9 SIMDKSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSL-----KLVFDRESGKPKGFGFCE 63
Query: 563 FRSIDETTQAMA-FDGINFKGQKLK 634
++ + AM +G G+ L+
Sbjct: 64 YKDQETALSAMRNLNGYEIGGRTLR 88
>AE014297-773|AAF54259.1| 91|Drosophila melanogaster CG8021-PA
protein.
Length = 91
Score = 33.9 bits (74), Expect = 0.21
Identities = 19/72 (26%), Positives = 35/72 (48%)
Frame = +2
Query: 377 VGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAF 556
+ S R + +L+VGN+P+ + +E +F++ H+ A V Q+ L K++ F
Sbjct: 1 MSSGFVRSSYKLFVGNLPWTIGSKELRTYFSKYGHV-----ANAEVVFDRQLGLSKHYGF 55
Query: 557 LEFRSIDETTQA 592
+ F D A
Sbjct: 56 VVFSQRDAFNSA 67
>AY058477-1|AAL13706.1| 529|Drosophila melanogaster GH28335p
protein.
Length = 529
Score = 32.3 bits (70), Expect = 0.64
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +2
Query: 377 VGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKN--F 550
+G TI+ RL+VGNIP +E +E F++ H GL + + + + KN F
Sbjct: 236 IGVTISFNNHRLFVGNIPKNRDRDELIEEFSK--HAPGLYEVI---IYSSPDDKKKNRGF 290
Query: 551 AFLEFRS 571
FLE+ S
Sbjct: 291 CFLEYES 297
>AE014297-2865|AAN13835.1| 529|Drosophila melanogaster CG17838-PB,
isoform B protein.
Length = 529
Score = 32.3 bits (70), Expect = 0.64
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +2
Query: 377 VGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKN--F 550
+G TI+ RL+VGNIP +E +E F++ H GL + + + + KN F
Sbjct: 236 IGVTISFNNHRLFVGNIPKNRDRDELIEEFSK--HAPGLYEVI---IYSSPDDKKKNRGF 290
Query: 551 AFLEFRS 571
FLE+ S
Sbjct: 291 CFLEYES 297
>AY061516-1|AAL29064.1| 418|Drosophila melanogaster LD46870p
protein.
Length = 418
Score = 29.5 bits (63), Expect = 4.5
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 362 AAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLA 496
A++P + R LYVGN+P +TE E + F Q + +A
Sbjct: 218 ASLPTLEPPEDRNITTLYVGNLPEEITEPELRDQFYQFGEIRSIA 262
>AE014297-14|AAF52166.2| 418|Drosophila melanogaster CG14641-PA
protein.
Length = 418
Score = 29.5 bits (63), Expect = 4.5
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 362 AAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLA 496
A++P + R LYVGN+P +TE E + F Q + +A
Sbjct: 218 ASLPTLEPPEDRNITTLYVGNLPEEITEPELRDQFYQFGEIRSIA 262
>AY051919-1|AAK93343.1| 255|Drosophila melanogaster LD40489p
protein.
Length = 255
Score = 29.1 bits (62), Expect = 6.0
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Frame = +2
Query: 392 TRQARRLYVGNIPFGVTEEETMEFFNQ--QMHLSGLAQAAGNPVLACQINLDKNFAFLEF 565
+R R+YVGN+P + ++ + F++ ++ L G P FAF+EF
Sbjct: 3 SRNECRIYVGNLPPDIRTKDIQDLFHKFGKVTFVDLKNRRGPP-----------FAFVEF 51
Query: 566 RSIDETTQAM-AFDGINFKGQKLK 634
+ A+ A DG ++ G +L+
Sbjct: 52 EDARDADDAVKARDGYDYDGYRLR 75
>AF234157-1|AAF60294.1| 255|Drosophila melanogaster SR family
splicing factor protein.
Length = 255
Score = 29.1 bits (62), Expect = 6.0
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Frame = +2
Query: 392 TRQARRLYVGNIPFGVTEEETMEFFNQ--QMHLSGLAQAAGNPVLACQINLDKNFAFLEF 565
+R R+YVGN+P + ++ + F++ ++ L G P FAF+EF
Sbjct: 3 SRNECRIYVGNLPPDIRTKDIQDLFHKFGKVTFVDLKNRRGPP-----------FAFVEF 51
Query: 566 RSIDETTQAM-AFDGINFKGQKLK 634
+ A+ A DG ++ G +L+
Sbjct: 52 EDARDADDAVKARDGYDYDGYRLR 75
>AF232773-1|AAF43413.1| 255|Drosophila melanogaster SR family
splicing factor SF2 protein.
Length = 255
Score = 29.1 bits (62), Expect = 6.0
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Frame = +2
Query: 392 TRQARRLYVGNIPFGVTEEETMEFFNQ--QMHLSGLAQAAGNPVLACQINLDKNFAFLEF 565
+R R+YVGN+P + ++ + F++ ++ L G P FAF+EF
Sbjct: 3 SRNECRIYVGNLPPDIRTKDIQDLFHKFGKVTFVDLKNRRGPP-----------FAFVEF 51
Query: 566 RSIDETTQAM-AFDGINFKGQKLK 634
+ A+ A DG ++ G +L+
Sbjct: 52 EDARDADDAVKARDGYDYDGYRLR 75
>AE014297-2188|AAF55300.1| 255|Drosophila melanogaster CG6987-PA
protein.
Length = 255
Score = 29.1 bits (62), Expect = 6.0
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Frame = +2
Query: 392 TRQARRLYVGNIPFGVTEEETMEFFNQ--QMHLSGLAQAAGNPVLACQINLDKNFAFLEF 565
+R R+YVGN+P + ++ + F++ ++ L G P FAF+EF
Sbjct: 3 SRNECRIYVGNLPPDIRTKDIQDLFHKFGKVTFVDLKNRRGPP-----------FAFVEF 51
Query: 566 RSIDETTQAM-AFDGINFKGQKLK 634
+ A+ A DG ++ G +L+
Sbjct: 52 EDARDADDAVKARDGYDYDGYRLR 75
>AY069521-1|AAL39666.2| 958|Drosophila melanogaster LD23810p
protein.
Length = 958
Score = 28.7 bits (61), Expect = 7.9
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = +2
Query: 284 HITPLQYKAMQAAGQIPANIVADTPQ--AAVPVVGSTITRQAR--RLYVGNIPFGVTEEE 451
H P Q A AA +P++ V+ T Q ++ GS T LY+GN+ ++E++
Sbjct: 173 HSAPAQQPAASAA-PVPSSSVSTTSQNSSSSKESGSFDTGDPNTTNLYLGNLNPKISEQQ 231
Query: 452 TMEFFNQQMHLSGL 493
ME F + L+ +
Sbjct: 232 LMEIFGRYGPLASI 245
>AY051860-1|AAK93284.1| 594|Drosophila melanogaster LD35730p
protein.
Length = 594
Score = 28.7 bits (61), Expect = 7.9
Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +2
Query: 407 RLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 586
RLYVG++ F +TE+ F + + ++ + K + F+ + + D+
Sbjct: 336 RLYVGSLHFNITEDMLRGIFEPFGKIDAI-----QLIMDTETGRSKGYGFITYHNADDAK 390
Query: 587 QAM-AFDGINFKGQKLK 634
+A+ +G G+ +K
Sbjct: 391 KALEQLNGFELAGRLMK 407
>AE014298-3112|AAN09672.1| 90|Drosophila melanogaster CG33714-PB,
isoform B protein.
Length = 90
Score = 28.7 bits (61), Expect = 7.9
Identities = 18/71 (25%), Positives = 34/71 (47%)
Frame = +2
Query: 362 AAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLD 541
AAV VG ++ R++VGN+P+ V +E +F + + + N + +
Sbjct: 5 AAVAKVGKSV----HRIFVGNLPWTVGHQELRGYFREFGRV-----VSANVIFDKRTGCS 55
Query: 542 KNFAFLEFRSI 574
K + F+ F S+
Sbjct: 56 KGYGFVSFNSL 66
>AE014298-3111|AAN09673.1| 90|Drosophila melanogaster CG33714-PA,
isoform A protein.
Length = 90
Score = 28.7 bits (61), Expect = 7.9
Identities = 18/71 (25%), Positives = 34/71 (47%)
Frame = +2
Query: 362 AAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLD 541
AAV VG ++ R++VGN+P+ V +E +F + + + N + +
Sbjct: 5 AAVAKVGKSV----HRIFVGNLPWTVGHQELRGYFREFGRV-----VSANVIFDKRTGCS 55
Query: 542 KNFAFLEFRSI 574
K + F+ F S+
Sbjct: 56 KGYGFVSFNSL 66
>AE014134-1228|AAN10619.1| 287|Drosophila melanogaster CG11266-PG,
isoform G protein.
Length = 287
Score = 28.7 bits (61), Expect = 7.9
Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +2
Query: 407 RLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 586
RLYVG++ F +TE+ F + + ++ + K + F+ + + D+
Sbjct: 29 RLYVGSLHFNITEDMLRGIFEPFGKIDAI-----QLIMDTETGRSKGYGFITYHNADDAK 83
Query: 587 QAM-AFDGINFKGQKLK 634
+A+ +G G+ +K
Sbjct: 84 KALEQLNGFELAGRLMK 100
>AE014134-1227|AAN10618.1| 287|Drosophila melanogaster CG11266-PF,
isoform F protein.
Length = 287
Score = 28.7 bits (61), Expect = 7.9
Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +2
Query: 407 RLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 586
RLYVG++ F +TE+ F + + ++ + K + F+ + + D+
Sbjct: 29 RLYVGSLHFNITEDMLRGIFEPFGKIDAI-----QLIMDTETGRSKGYGFITYHNADDAK 83
Query: 587 QAM-AFDGINFKGQKLK 634
+A+ +G G+ +K
Sbjct: 84 KALEQLNGFELAGRLMK 100
>AE014134-1226|AAN10615.2| 287|Drosophila melanogaster CG11266-PE,
isoform E protein.
Length = 287
Score = 28.7 bits (61), Expect = 7.9
Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +2
Query: 407 RLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 586
RLYVG++ F +TE+ F + + ++ + K + F+ + + D+
Sbjct: 29 RLYVGSLHFNITEDMLRGIFEPFGKIDAI-----QLIMDTETGRSKGYGFITYHNADDAK 83
Query: 587 QAM-AFDGINFKGQKLK 634
+A+ +G G+ +K
Sbjct: 84 KALEQLNGFELAGRLMK 100
>AE014134-1225|AAN10617.1| 287|Drosophila melanogaster CG11266-PD,
isoform D protein.
Length = 287
Score = 28.7 bits (61), Expect = 7.9
Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +2
Query: 407 RLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 586
RLYVG++ F +TE+ F + + ++ + K + F+ + + D+
Sbjct: 29 RLYVGSLHFNITEDMLRGIFEPFGKIDAI-----QLIMDTETGRSKGYGFITYHNADDAK 83
Query: 587 QAM-AFDGINFKGQKLK 634
+A+ +G G+ +K
Sbjct: 84 KALEQLNGFELAGRLMK 100
>AE014134-1224|AAN10616.1| 287|Drosophila melanogaster CG11266-PC,
isoform C protein.
Length = 287
Score = 28.7 bits (61), Expect = 7.9
Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +2
Query: 407 RLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 586
RLYVG++ F +TE+ F + + ++ + K + F+ + + D+
Sbjct: 29 RLYVGSLHFNITEDMLRGIFEPFGKIDAI-----QLIMDTETGRSKGYGFITYHNADDAK 83
Query: 587 QAM-AFDGINFKGQKLK 634
+A+ +G G+ +K
Sbjct: 84 KALEQLNGFELAGRLMK 100
>AE014134-1223|AAN10614.1| 594|Drosophila melanogaster CG11266-PB,
isoform B protein.
Length = 594
Score = 28.7 bits (61), Expect = 7.9
Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +2
Query: 407 RLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 586
RLYVG++ F +TE+ F + + ++ + K + F+ + + D+
Sbjct: 336 RLYVGSLHFNITEDMLRGIFEPFGKIDAI-----QLIMDTETGRSKGYGFITYHNADDAK 390
Query: 587 QAM-AFDGINFKGQKLK 634
+A+ +G G+ +K
Sbjct: 391 KALEQLNGFELAGRLMK 407
>AE014134-1222|AAF52478.1| 594|Drosophila melanogaster CG11266-PA,
isoform A protein.
Length = 594
Score = 28.7 bits (61), Expect = 7.9
Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +2
Query: 407 RLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 586
RLYVG++ F +TE+ F + + ++ + K + F+ + + D+
Sbjct: 336 RLYVGSLHFNITEDMLRGIFEPFGKIDAI-----QLIMDTETGRSKGYGFITYHNADDAK 390
Query: 587 QAM-AFDGINFKGQKLK 634
+A+ +G G+ +K
Sbjct: 391 KALEQLNGFELAGRLMK 407
>AE013599-3105|AAF46654.1| 957|Drosophila melanogaster CG9346-PA
protein.
Length = 957
Score = 28.7 bits (61), Expect = 7.9
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = +2
Query: 284 HITPLQYKAMQAAGQIPANIVADTPQ--AAVPVVGSTITRQAR--RLYVGNIPFGVTEEE 451
H P Q A AA +P++ V+ T Q ++ GS T LY+GN+ ++E++
Sbjct: 172 HSAPAQQPAASAA-PVPSSSVSTTSQNSSSSKESGSFDTGDPNTTNLYLGNLNPKISEQQ 230
Query: 452 TMEFFNQQMHLSGL 493
ME F + L+ +
Sbjct: 231 LMEIFGRYGPLASI 244
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,403,911
Number of Sequences: 53049
Number of extensions: 685000
Number of successful extensions: 1926
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 1746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1911
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 3013199100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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