Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0244
(686 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 196 1e-50
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 196 1e-50
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 196 1e-50
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 196 1e-50
Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical p... 42 4e-04
Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical pr... 42 4e-04
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 39 0.003
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 36 0.021
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 36 0.021
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 35 0.047
AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical ... 34 0.083
AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical ... 34 0.083
AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical ... 34 0.083
AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical ... 34 0.083
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 32 0.33
U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical p... 32 0.33
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 31 0.58
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 31 0.58
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 31 1.0
U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical p... 31 1.0
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 29 2.4
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 29 2.4
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 28 5.4
Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 28 7.2
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 196 bits (478), Expect = 1e-50
Identities = 91/127 (71%), Positives = 104/127 (81%)
Frame = +2
Query: 254 YWDVPPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPF 433
+WDVPP GFE TP++YK MQAAGQ+P V Q+AVPVVG ++T Q+RRLYVGNIPF
Sbjct: 138 FWDVPPTGFETTTPMEYKNMQAAGQVPRGSV----QSAVPVVGPSVTCQSRRLYVGNIPF 193
Query: 434 GVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGIN 613
G EE ++FFNQQMHL GLAQA GNP+L CQINLDKNFAF+EFRSIDETT MAFDGIN
Sbjct: 194 GCNEEAMLDFFNQQMHLCGLAQAPGNPILLCQINLDKNFAFIEFRSIDETTAGMAFDGIN 253
Query: 614 FKGQKLK 634
F GQ+LK
Sbjct: 254 FMGQQLK 260
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +3
Query: 621 GKSLKIRRPHDYQPMPGT 674
G+ LK+RRP DYQP T
Sbjct: 256 GQQLKVRRPRDYQPSQNT 273
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 196 bits (478), Expect = 1e-50
Identities = 91/127 (71%), Positives = 104/127 (81%)
Frame = +2
Query: 254 YWDVPPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPF 433
+WDVPP GFE TP++YK MQAAGQ+P V Q+AVPVVG ++T Q+RRLYVGNIPF
Sbjct: 138 FWDVPPTGFETTTPMEYKNMQAAGQVPRGSV----QSAVPVVGPSVTCQSRRLYVGNIPF 193
Query: 434 GVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGIN 613
G EE ++FFNQQMHL GLAQA GNP+L CQINLDKNFAF+EFRSIDETT MAFDGIN
Sbjct: 194 GCNEEAMLDFFNQQMHLCGLAQAPGNPILLCQINLDKNFAFIEFRSIDETTAGMAFDGIN 253
Query: 614 FKGQKLK 634
F GQ+LK
Sbjct: 254 FMGQQLK 260
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +3
Query: 621 GKSLKIRRPHDYQPMPGT 674
G+ LK+RRP DYQP T
Sbjct: 256 GQQLKVRRPRDYQPSQNT 273
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 196 bits (478), Expect = 1e-50
Identities = 91/127 (71%), Positives = 104/127 (81%)
Frame = +2
Query: 254 YWDVPPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPF 433
+WDVPP GFE TP++YK MQAAGQ+P V Q+AVPVVG ++T Q+RRLYVGNIPF
Sbjct: 113 FWDVPPTGFETTTPMEYKNMQAAGQVPRGSV----QSAVPVVGPSVTCQSRRLYVGNIPF 168
Query: 434 GVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGIN 613
G EE ++FFNQQMHL GLAQA GNP+L CQINLDKNFAF+EFRSIDETT MAFDGIN
Sbjct: 169 GCNEEAMLDFFNQQMHLCGLAQAPGNPILLCQINLDKNFAFIEFRSIDETTAGMAFDGIN 228
Query: 614 FKGQKLK 634
F GQ+LK
Sbjct: 229 FMGQQLK 235
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +3
Query: 621 GKSLKIRRPHDYQPMPGT 674
G+ LK+RRP DYQP T
Sbjct: 231 GQQLKVRRPRDYQPSQNT 248
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 196 bits (478), Expect = 1e-50
Identities = 91/127 (71%), Positives = 104/127 (81%)
Frame = +2
Query: 254 YWDVPPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPF 433
+WDVPP GFE TP++YK MQAAGQ+P V Q+AVPVVG ++T Q+RRLYVGNIPF
Sbjct: 116 FWDVPPTGFETTTPMEYKNMQAAGQVPRGSV----QSAVPVVGPSVTCQSRRLYVGNIPF 171
Query: 434 GVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGIN 613
G EE ++FFNQQMHL GLAQA GNP+L CQINLDKNFAF+EFRSIDETT MAFDGIN
Sbjct: 172 GCNEEAMLDFFNQQMHLCGLAQAPGNPILLCQINLDKNFAFIEFRSIDETTAGMAFDGIN 231
Query: 614 FKGQKLK 634
F GQ+LK
Sbjct: 232 FMGQQLK 238
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +3
Query: 621 GKSLKIRRPHDYQPMPGT 674
G+ LK+RRP DYQP T
Sbjct: 234 GQQLKVRRPRDYQPSQNT 251
>Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 41.9 bits (94), Expect = 4e-04
Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = +2
Query: 404 RRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNP-VLACQINLDKNFAFLEFRSIDE 580
R +YVGN+P GV E +E FN A+ A P L C +A++EF
Sbjct: 163 RTVYVGNLPKGVDGNEVLELFNMYFGEVMYARMASGPDALPCA------YAYVEFSQQAS 216
Query: 581 TTQAMAFDGINFKGQKLK 634
A+ DG FK + LK
Sbjct: 217 VCNALQNDGFEFKERPLK 234
>Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 41.9 bits (94), Expect = 4e-04
Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = +2
Query: 404 RRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNP-VLACQINLDKNFAFLEFRSIDE 580
R +YVGN+P GV E +E FN A+ A P L C +A++EF
Sbjct: 163 RTVYVGNLPKGVDGNEVLELFNMYFGEVMYARMASGPDALPCA------YAYVEFSQQAS 216
Query: 581 TTQAMAFDGINFKGQKLK 634
A+ DG FK + LK
Sbjct: 217 VCNALQNDGFEFKERPLK 234
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Frame = +2
Query: 410 LYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQ 589
+YVGN PF TE++ +F+Q ++S + V + + FAF+EF +
Sbjct: 6 VYVGNAPFQTTEDDLGNYFSQAGNVSNV-----RIVCDRETGRPRGFAFVEFTEEAAAQR 60
Query: 590 AM-AFDGINFKGQKLK 634
A+ F+G++F G+ L+
Sbjct: 61 AVDQFNGVDFNGRALR 76
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 36.3 bits (80), Expect = 0.021
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Frame = +2
Query: 410 LYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLAC--QINLDKNFAFLEFRSIDET 583
+YVGN PF TEEE FF S + Q N + C + + FAF+EF
Sbjct: 7 VYVGNAPFQTTEEELGNFF------SSIGQ-INNVRIVCDRETGRPRGFAFIEFAEEGSA 59
Query: 584 TQAM-AFDGINFKGQKLK 634
+A+ +G F G+ L+
Sbjct: 60 QRAVEQMNGAEFNGRPLR 77
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 36.3 bits (80), Expect = 0.021
Identities = 21/75 (28%), Positives = 39/75 (52%)
Frame = +2
Query: 410 LYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQ 589
++VGN+PF +TE+ + FF+ Q+ G +A V K FAF+ F+ +
Sbjct: 248 IFVGNLPFEITEDALITFFSAQI---GPVEAV-RIVRDKDTGKGKGFAFVNFKQDSSVSL 303
Query: 590 AMAFDGINFKGQKLK 634
A++ + I + + L+
Sbjct: 304 ALSMETIKMEKRDLR 318
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 35.1 bits (77), Expect = 0.047
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = +2
Query: 398 QARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSID 577
Q +YVGN+P+ TEEE +F H++ + V + + FAF+EF
Sbjct: 4 QGFSVYVGNVPYQGTEEEIGNYFAAVGHVNNV-----RIVYDRETGRPRGFAFVEFSEEA 58
Query: 578 ETTQAM-AFDGINFKGQKLK 634
+A+ +G+ F G+ L+
Sbjct: 59 GAQRAVEQLNGVAFNGRNLR 78
>AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical
protein F29C4.7b protein.
Length = 423
Score = 34.3 bits (75), Expect = 0.083
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = +2
Query: 404 RRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDET 583
R L+VGN+P V E E F + G + + IN D +AF+ F+++D+
Sbjct: 169 RTLFVGNMPSDVKEREIRHVFEEH----GKVEEVD---IKTPINTDAAYAFVMFQTVDQA 221
Query: 584 TQAMA 598
QA A
Sbjct: 222 IQAKA 226
>AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical
protein F29C4.7a protein.
Length = 520
Score = 34.3 bits (75), Expect = 0.083
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = +2
Query: 404 RRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDET 583
R L+VGN+P V E E F + G + + IN D +AF+ F+++D+
Sbjct: 169 RTLFVGNMPSDVKEREIRHVFEEH----GKVEEVD---IKTPINTDAAYAFVMFQTVDQA 221
Query: 584 TQAMA 598
QA A
Sbjct: 222 IQAKA 226
>AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical
protein F29C4.7c protein.
Length = 497
Score = 34.3 bits (75), Expect = 0.083
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = +2
Query: 404 RRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDET 583
R L+VGN+P V E E F + G + + IN D +AF+ F+++D+
Sbjct: 146 RTLFVGNMPSDVKEREIRHVFEEH----GKVEEVD---IKTPINTDAAYAFVMFQTVDQA 198
Query: 584 TQAMA 598
QA A
Sbjct: 199 IQAKA 203
>AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical
protein T08B6.5 protein.
Length = 177
Score = 34.3 bits (75), Expect = 0.083
Identities = 23/77 (29%), Positives = 35/77 (45%)
Frame = +2
Query: 401 ARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDE 580
AR +YVGN+ + T E E F + G P KNFAF+EF+ ++
Sbjct: 45 ARSVYVGNVDWKSTVSEIEEHFA----VCGKVARVTIPKDKFT-GYQKNFAFVEFQKLES 99
Query: 581 TTQAMAFDGINFKGQKL 631
A+ G F+ +K+
Sbjct: 100 VQLALVLSGTMFRNRKI 116
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 32.3 bits (70), Expect = 0.33
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Frame = +2
Query: 401 ARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQ--INLDKNFAFLEFRSI 574
A+ +YVGN+ +G T EE Q H G + + C K FA++EF
Sbjct: 77 AKSVYVGNVDYGATAEE----IEQHFHGCG---SVSRVTIQCDRFSGHPKGFAYVEFTEK 129
Query: 575 DETTQAMAFDGINFKGQKLK 634
+ A+A +G+++K
Sbjct: 130 EGMQNALAMTDSLLRGRQIK 149
>U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical
protein EEED8.4 protein.
Length = 191
Score = 32.3 bits (70), Expect = 0.33
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = +2
Query: 401 ARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINL-DKNFAFLEFRSID 577
A+ +++GN+ F T EE E H G Q + + KNFA++EF
Sbjct: 54 AKSVFIGNVDFNSTIEEIEE------HFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSS 107
Query: 578 ETTQAMAFDGINFKGQKL 631
A+ +G F+ + +
Sbjct: 108 SIENALVMNGSLFRSRPI 125
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 31.5 bits (68), Expect = 0.58
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +2
Query: 404 RRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDET 583
+++YVGN+P V E+E + F++ + + +G FAF+EF +
Sbjct: 9 QKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGR---------GPAFAFVEFEDHRDA 59
Query: 584 TQAM-AFDGINFKGQKLK 634
A+ A DG F G++++
Sbjct: 60 EDAVRARDGYEFDGRRIR 77
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 31.5 bits (68), Expect = 0.58
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +2
Query: 404 RRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDET 583
+++YVGN+P V E+E + F++ + + +G FAF+EF +
Sbjct: 9 QKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGR---------GPAFAFVEFEDHRDA 59
Query: 584 TQAM-AFDGINFKGQKLK 634
A+ A DG F G++++
Sbjct: 60 EDAVRARDGYEFDGRRIR 77
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 30.7 bits (66), Expect = 1.0
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +2
Query: 407 RLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 586
RL++ N+P+ E++ F + +S + AC K FA +EF +
Sbjct: 280 RLFLRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGAC-----KGFAIVEFVFPEAAV 334
Query: 587 QA-MAFDGINFKGQKL 631
A A DG FKG+ +
Sbjct: 335 AAYSALDGYVFKGRMM 350
>U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical
protein EEED8.12 protein.
Length = 197
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Frame = +2
Query: 401 ARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINL-DKNFAFLEFRSID 577
A+ +++GN+ F T EE E H G + + KNFA++EF
Sbjct: 60 AKSVFIGNVDFNSTIEEVEE------HFKGCGHIVRTTIPKDKFTKKQKNFAYIEFDDSS 113
Query: 578 ETTQAMAFDGINFKGQKL 631
A+ +G F+ + +
Sbjct: 114 SIENALVMNGSLFRSRPI 131
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 29.5 bits (63), Expect = 2.4
Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Frame = +2
Query: 383 STITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLD----KNF 550
S+ T RRL+V NIPF E + L+ + + G PV+ +I + K F
Sbjct: 93 SSSTDGPRRLHVSNIPFKYREPD----------LTAMFEKVG-PVVDVEIIFNERGSKGF 141
Query: 551 AFLEFRSIDETTQAMA-FDGINFKGQKLKDSTST 649
F+ ++ D+ +A A F+G +G++++ + +T
Sbjct: 142 GFVTMQNPDDADRARAEFNGTTIEGRRVEVNLAT 175
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 29.5 bits (63), Expect = 2.4
Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Frame = +2
Query: 383 STITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLD----KNF 550
S+ T RRL+V NIPF E + L+ + + G PV+ +I + K F
Sbjct: 93 SSSTDGPRRLHVSNIPFKYREPD----------LTAMFEKVG-PVVDVEIIFNERGSKGF 141
Query: 551 AFLEFRSIDETTQAMA-FDGINFKGQKLKDSTST 649
F+ ++ D+ +A A F+G +G++++ + +T
Sbjct: 142 GFVTMQNPDDADRARAEFNGTTIEGRRVEVNLAT 175
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 365 AVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 472
A PVVGS T +++VG +P+ +++ E+F Q
Sbjct: 23 AEPVVGSRDT-MFTKIFVGGLPYHTSDKTLHEYFEQ 57
>Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical
protein Y57G11A.5 protein.
Length = 121
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +2
Query: 404 RRLYVGNIPFGVTEEE 451
R++YVGN+PF TE+E
Sbjct: 17 RQVYVGNMPFDATEKE 32
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical
protein W01F3.3 protein.
Length = 2175
Score = 27.9 bits (59), Expect = 7.2
Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 4/74 (5%)
Frame = +2
Query: 251 LYWDVPPPGFEHITPLQYKAMQAAGQIPANI----VADTPQAAVPVVGSTITRQARRLYV 418
L W+ EH P +A + + V TP+ P V +T TR A RL
Sbjct: 619 LSWEETEEDEEHAVPTTTPLAPSAPTVRVSTQRAPVPTTPRPTAPAVQTTTTR-ASRLET 677
Query: 419 GNIPFGVTEEETME 460
+P E+E E
Sbjct: 678 TRVPVKTVEDEEEE 691
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,095,364
Number of Sequences: 27780
Number of extensions: 329887
Number of successful extensions: 858
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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