Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0244
(686 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 72 3e-13
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 66 2e-11
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 66 2e-11
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 66 2e-11
At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing ... 61 6e-10
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 40 0.002
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 38 0.006
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 38 0.006
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 36 0.033
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 36 0.033
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 35 0.044
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 35 0.058
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 34 0.077
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 33 0.23
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 33 0.23
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 33 0.23
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 32 0.41
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 31 0.54
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 31 0.54
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 31 0.54
At3g46300.1 68416.m05011 hypothetical protein 31 0.72
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 31 0.72
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 31 0.72
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 31 0.72
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 31 0.72
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 31 0.95
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 30 1.3
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 30 1.3
At5g53180.1 68418.m06611 polypyrimidine tract-binding protein, p... 30 1.7
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 30 1.7
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 29 2.2
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 29 2.2
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 29 2.2
At2g14870.1 68415.m01690 RNA recognition motif (RRM)-containing ... 29 2.2
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 29 2.2
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 29 2.9
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 29 2.9
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 29 2.9
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 29 2.9
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 29 2.9
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 29 2.9
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 29 3.8
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 29 3.8
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 28 5.0
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 28 5.0
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 28 5.0
At2g20650.2 68415.m02422 zinc finger (C3HC4-type RING finger) fa... 28 5.0
At2g20650.1 68415.m02421 zinc finger (C3HC4-type RING finger) fa... 28 5.0
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 28 6.7
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 28 6.7
At1g53020.1 68414.m06002 ubiquitin-conjugating enzyme family pro... 28 6.7
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 27 8.8
At4g04640.1 68417.m00679 ATP synthase gamma chain 1, chloroplast... 27 8.8
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 72.1 bits (169), Expect = 3e-13
Identities = 38/103 (36%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Frame = +2
Query: 329 IPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMH-LSGLAQAA 505
+P + P V + TR ARR+YVG +P E+ FF+Q M + G
Sbjct: 230 VPGQQLGALPVLPVQAMTQQATRHARRVYVGGLPPTANEQSVSTFFSQVMSAIGGNTAGP 289
Query: 506 GNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQKLK 634
G+ V+ IN +K FAF+E RS++E + AMA DGI +G +K
Sbjct: 290 GDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIILEGVPVK 332
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 609 LILKGKSLKIRRPHDYQP 662
+IL+G +K+RRP DY P
Sbjct: 324 IILEGVPVKVRRPTDYNP 341
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 66.5 bits (155), Expect = 2e-11
Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Frame = +2
Query: 392 TRQARRLYVGNIPFGVTEEETMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFR 568
TR ARR+YVG + E+ FF+Q M + G G+ V+ IN +K FAF+E R
Sbjct: 235 TRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAFVEMR 294
Query: 569 SIDETTQAMAFDGINFKGQKLK 634
S++E + AM+ DGI F+G +K
Sbjct: 295 SVEEASNAMSLDGIIFEGAPVK 316
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 66.5 bits (155), Expect = 2e-11
Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Frame = +2
Query: 392 TRQARRLYVGNIPFGVTEEETMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFR 568
TR ARR+YVG + E+ FF+Q M + G G+ V+ IN +K FAF+E R
Sbjct: 235 TRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAFVEMR 294
Query: 569 SIDETTQAMAFDGINFKGQKLK 634
S++E + AM+ DGI F+G +K
Sbjct: 295 SVEEASNAMSLDGIIFEGAPVK 316
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 66.5 bits (155), Expect = 2e-11
Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Frame = +2
Query: 392 TRQARRLYVGNIPFGVTEEETMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFR 568
TR ARR+YVG + E+ FF+Q M + G G+ V+ IN +K FAF+E R
Sbjct: 235 TRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAFVEMR 294
Query: 569 SIDETTQAMAFDGINFKGQKLK 634
S++E + AM+ DGI F+G +K
Sbjct: 295 SVEEASNAMSLDGIIFEGAPVK 316
>At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 979
Score = 61.3 bits (142), Expect = 6e-10
Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Frame = +2
Query: 392 TRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGN-PVLACQINLDKNFAFLEFR 568
TR+ RRLY N+P +E+ +E FN M SG G+ P ++C IN +K+ A +EF
Sbjct: 874 TRRMRRLYAENVPDSASEKSLIECFNGYMLSSGSNHIKGSEPCISCIINKEKSQALVEFL 933
Query: 569 SIDETTQAMAFDGINFKGQKLK 634
+ + + A++ DG +F G LK
Sbjct: 934 TPQDASAALSLDGCSFAGSNLK 955
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/79 (26%), Positives = 40/79 (50%)
Frame = +2
Query: 395 RQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSI 574
RQ +++VGN+P + + E EFF Q + + G+ ++ + F F+ + +
Sbjct: 162 RQEGKIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHH----EVEKNAGFGFIIYAAE 217
Query: 575 DETTQAMAFDGINFKGQKL 631
+A+ FDG+ F G+ L
Sbjct: 218 KSAMKAVEFDGVEFHGRIL 236
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 37.9 bits (84), Expect = 0.006
Identities = 22/80 (27%), Positives = 37/80 (46%)
Frame = +2
Query: 401 ARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDE 580
AR +YVGN+ + T EE Q+H +L + K FA++EF ++
Sbjct: 88 ARSVYVGNVDYACTPEEV------QLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEA 141
Query: 581 TTQAMAFDGINFKGQKLKDS 640
+A+ + G++LK S
Sbjct: 142 VQEALQLNESELHGRQLKVS 161
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 37.9 bits (84), Expect = 0.006
Identities = 22/80 (27%), Positives = 37/80 (46%)
Frame = +2
Query: 401 ARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDE 580
AR +YVGN+ + T EE Q+H +L + K FA++EF ++
Sbjct: 88 ARSVYVGNVDYACTPEEV------QLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEA 141
Query: 581 TTQAMAFDGINFKGQKLKDS 640
+A+ + G++LK S
Sbjct: 142 VQEALQLNESELHGRQLKVS 161
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 35.5 bits (78), Expect = 0.033
Identities = 20/78 (25%), Positives = 35/78 (44%)
Frame = +2
Query: 401 ARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDE 580
AR ++VGN+ + T EE Q H +L + K FA++EF ++
Sbjct: 91 ARSVFVGNVDYACTPEEV------QQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEA 144
Query: 581 TTQAMAFDGINFKGQKLK 634
+A+ + G++LK
Sbjct: 145 VQEALQLNESELHGRQLK 162
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 35.5 bits (78), Expect = 0.033
Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Frame = +2
Query: 356 PQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQIN 535
P+ + P + A R+YVGN+P+ V + F++ + V +
Sbjct: 228 PRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKV-----VEARVVYDRETG 282
Query: 536 LDKNFAFLEFRSIDETTQAM-AFDGINFKGQKLK 634
+ F F+ +DE +A+ A DG N +G+ ++
Sbjct: 283 RSRGFGFVTMSDVDELNEAISALDGQNLEGRAIR 316
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 35.1 bits (77), Expect = 0.044
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +2
Query: 401 ARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDE 580
ARRLYVGN+ ++E++ + F + L Q + C K F F++F +++
Sbjct: 284 ARRLYVGNLHINMSEDDLRKVF-ESFGSVELVQVPRDETGLC-----KGFGFVQFARLED 337
Query: 581 TTQAMAFDG-INFKGQKLKDSTST 649
A+ +G + G+ +K S T
Sbjct: 338 ARNALNLNGQLEIAGRAIKVSAVT 361
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 34.7 bits (76), Expect = 0.058
Identities = 19/80 (23%), Positives = 35/80 (43%)
Frame = +2
Query: 401 ARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDE 580
+R +YVGN+ + T EE Q H +L + K FA++EF ++
Sbjct: 102 SRSIYVGNVDYACTPEEV------QQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEA 155
Query: 581 TTQAMAFDGINFKGQKLKDS 640
++ + G+++K S
Sbjct: 156 VQNSLILNESELHGRQIKVS 175
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 34.3 bits (75), Expect = 0.077
Identities = 17/79 (21%), Positives = 40/79 (50%)
Frame = +2
Query: 404 RRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDET 583
R +++GN+PF V +EE + F + +L +A + +N+ K A++ F++ +
Sbjct: 283 RTVFMGNLPFDVKDEEVYQLFTGKSNLENSIEAV-RVIRDPHLNIGKGIAYVLFKTREAA 341
Query: 584 TQAMAFDGINFKGQKLKDS 640
+ + + ++L+ S
Sbjct: 342 NLVLKKGYLKLRERELRIS 360
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 32.7 bits (71), Expect = 0.23
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +2
Query: 401 ARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKN-FAFLE 562
+R L+VGN+P G+ E E + F + L LA G N D++ FA +E
Sbjct: 22 SRHLWVGNLPHGILERELADRFLRFGELESLAFQPGRSYAFVNFNHDEDAFAAIE 76
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 32.7 bits (71), Expect = 0.23
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +2
Query: 407 RLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 586
RLYVGN+P+ +T E + F + + + Q + V + + F F+ SI+E
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDV-QIVYDKV----TDRSRGFGFVTMGSIEEAK 171
Query: 587 QAM-AFDGINFKGQKLK 634
+AM F+ G+ +K
Sbjct: 172 EAMQMFNSSQIGGRTVK 188
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 32.7 bits (71), Expect = 0.23
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Frame = +2
Query: 407 RLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQ-INLDKNFAFLEFRSIDET 583
++YVGN+P+ T+ + + + H S VL + ++ FAFL F S +E
Sbjct: 213 KVYVGNLPW-FTQPDGL-----RNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEER 266
Query: 584 TQAMAFDGINFKGQKL 631
A++F+G ++G+++
Sbjct: 267 DAALSFNGTQYEGRRI 282
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 31.9 bits (69), Expect = 0.41
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 356 PQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 472
P PV + +A LY+G IP G E E FF+Q
Sbjct: 44 PARKAPVTTPPLQNKATVLYIGRIPHGFYETEIEAFFSQ 82
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 31.5 bits (68), Expect = 0.54
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Frame = +2
Query: 392 TRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINL---DKNFAFLE 562
+R +R +YVGN+P + E E + F++ PV+ + + +AF+E
Sbjct: 3 SRSSRTIYVGNLPGDIREREVEDLFSKY-----------GPVVQIDLKIPPRPPGYAFVE 51
Query: 563 FRSIDETTQAM-AFDGINFKGQKLK 634
F + A+ DG +F G L+
Sbjct: 52 FEDARDADDAIYGRDGYDFDGHHLR 76
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 31.5 bits (68), Expect = 0.54
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Frame = +2
Query: 392 TRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINL---DKNFAFLE 562
+R +R +YVGN+P + E E + F++ PV+ + + +AF+E
Sbjct: 3 SRSSRTIYVGNLPGDIREREVEDLFSKY-----------GPVVQIDLKIPPRPPGYAFVE 51
Query: 563 FRSIDETTQAM-AFDGINFKGQKLK 634
F + A+ DG +F G L+
Sbjct: 52 FEDARDADDAIYGRDGYDFDGHHLR 76
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 31.5 bits (68), Expect = 0.54
Identities = 18/81 (22%), Positives = 39/81 (48%)
Frame = +2
Query: 407 RLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 586
+++VG I + E E F++ + ++ + + FAF+ F S +E +
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEV-----VDAKIIVDRETGRSRGFAFVTFTSTEEAS 89
Query: 587 QAMAFDGINFKGQKLKDSTST 649
AM DG + G++++ + +T
Sbjct: 90 NAMQLDGQDLHGRRIRVNYAT 110
>At3g46300.1 68416.m05011 hypothetical protein
Length = 141
Score = 31.1 bits (67), Expect = 0.72
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = +1
Query: 256 LGCTAAGIRAYHAITIQGDASG-GSDSCQYCRRHTTSCRAGGGFDYNTSSAKVICRQHTL 432
+ C +R+Y T + + G G D RRH SC GGG +AK R +
Sbjct: 57 ISCRQMYLRSYTFSTEENEEDGDGGDGEAVTRRHNQSCFRGGG--GRKKAAKNAMRNNKT 114
Query: 433 WRHR 444
W R
Sbjct: 115 WSCR 118
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 31.1 bits (67), Expect = 0.72
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Frame = +2
Query: 404 RRLYVGNIPFGVTEEETMEFFNQQMHLS----GLAQAAGNPVLACQINLDKNFAFLEFRS 571
R++YV N+ + ++ +EFF++ + GL +A G P K FA +RS
Sbjct: 227 RKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRP---------KGFALFVYRS 277
Query: 572 IDETTQAMAFDGINFKGQKL 631
++ +A+ F+G L
Sbjct: 278 LESAKKALEEPHKTFEGHVL 297
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 31.1 bits (67), Expect = 0.72
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Frame = +2
Query: 392 TRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINL---DKNFAFLE 562
+R +R +YVGN+P + E E + F++ PV+ + + +AF+E
Sbjct: 3 SRSSRTVYVGNLPGDIREREVEDLFSKY-----------GPVVQIDLKVPPRPPGYAFVE 51
Query: 563 FRSIDETTQAM-AFDGINFKGQKLK 634
F + A+ DG +F G +L+
Sbjct: 52 FDDARDAEDAIHGRDGYDFDGHRLR 76
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 31.1 bits (67), Expect = 0.72
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Frame = +2
Query: 392 TRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINL---DKNFAFLE 562
+R +R +YVGN+P + E E + F++ PV+ + + +AF+E
Sbjct: 3 SRSSRTVYVGNLPGDIREREVEDLFSKY-----------GPVVQIDLKVPPRPPGYAFVE 51
Query: 563 FRSIDETTQAM-AFDGINFKGQKLK 634
F + A+ DG +F G +L+
Sbjct: 52 FDDARDAEDAIHGRDGYDFDGHRLR 76
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 31.1 bits (67), Expect = 0.72
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Frame = +2
Query: 392 TRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINL---DKNFAFLE 562
+R +R +YVGN+P + E E + F++ PV+ + + +AF+E
Sbjct: 3 SRSSRTVYVGNLPGDIREREVEDLFSKY-----------GPVVQIDLKVPPRPPGYAFVE 51
Query: 563 FRSIDETTQAM-AFDGINFKGQKLK 634
F + A+ DG +F G +L+
Sbjct: 52 FDDARDAEDAIHGRDGYDFDGHRLR 76
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 30.7 bits (66), Expect = 0.95
Identities = 20/68 (29%), Positives = 33/68 (48%)
Frame = +2
Query: 410 LYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQ 589
+YVG IPF +TE + + F+Q + + N + K FAFL + D+ +
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDV-----NLIRDKGTGKSKGFAFLAYE--DQRST 90
Query: 590 AMAFDGIN 613
+A D +N
Sbjct: 91 ILAVDNLN 98
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Frame = +2
Query: 401 ARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQI-NLDKNFAFLEFRSID 577
A +L++G + F TE+ E F S Q ++ ++ + K F F+ F S D
Sbjct: 33 ASKLFIGGLSFCTTEQGLSEAF------SKCGQVVEAQIVMDRVSDRSKGFGFVTFASAD 86
Query: 578 ETTQA-MAFDGINFKGQKL 631
E +A M F+G G+ +
Sbjct: 87 EAQKALMEFNGQQLNGRTI 105
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +2
Query: 407 RLYVGNIPFGVTEEETMEFFN 469
RL+V N+P+ TEEE ME F+
Sbjct: 262 RLFVRNLPYTATEEELMEHFS 282
>At5g53180.1 68418.m06611 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo
sapiens} SP|P26599; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 429
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +2
Query: 410 LYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPV-LACQINLDKNFAFLEFRSIDETT 586
L++ N+P+ TEEE +E L + G V C + ++N AF+EF +++
Sbjct: 20 LHLRNLPWECTEEELIE----------LGKPFGTVVNTKCNVGANRNQAFIEFEDLNQAI 69
Query: 587 QAMAF 601
Q +++
Sbjct: 70 QMISY 74
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 29.9 bits (64), Expect = 1.7
Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Frame = +2
Query: 356 PQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQIN 535
P+ + P + A R+YVGN+P+ V F++ + V +
Sbjct: 191 PRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKV-----VDARVVSDRETG 245
Query: 536 LDKNFAFLEFRSIDETTQAM-AFDGINFKGQKLK 634
+ F F++ + +E A+ A DG N +G+ +K
Sbjct: 246 RSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIK 279
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 359 QAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 472
Q AV GS+I +LY+ N+ +GV+ E+ E F++
Sbjct: 94 QTAVVGGGSSI-ETGTKLYISNLDYGVSNEDIKELFSE 130
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +2
Query: 407 RLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 586
RLYVGN+ +GV + FN+Q + + K F F+ S E
Sbjct: 250 RLYVGNLSWGVDDMALENLFNEQGKV-----VEARVIYDRDSGRSKGFGFVTLSSSQEVQ 304
Query: 587 QAM-AFDGINFKGQKLKDS 640
+A+ + +G + G++++ S
Sbjct: 305 KAINSLNGADLDGRQIRVS 323
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +2
Query: 407 RLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 586
RLYVGN+ +GV + FN+Q + + K F F+ S E
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKV-----VEARVIYDRDSGRSKGFGFVTLSSSQEVQ 312
Query: 587 QAM-AFDGINFKGQKLKDS 640
+A+ + +G + G++++ S
Sbjct: 313 KAINSLNGADLDGRQIRVS 331
>At2g14870.1 68415.m01690 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q10572 Sex determination
protein fox-1 (Feminizing locus on X protein 1)
{Caenorhabditis elegans}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 404 RRLYVGNIPFGVTEEETMEFFNQ 472
R LY+ N+PF +T E+T + F +
Sbjct: 20 RLLYICNLPFSITSEDTYDLFGR 42
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = +2
Query: 407 RLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 586
+LYV + F TE+ + F Q +L + N V+ N K FAFL + + +E
Sbjct: 78 KLYVSGLSFRTTEDTLRDTFEQFGNLIHM-----NMVMDKVANRPKGFAFLRYETEEEAM 132
Query: 587 QAM 595
+A+
Sbjct: 133 KAI 135
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 29.1 bits (62), Expect = 2.9
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +2
Query: 398 QARRLYVGNIPFGVTEEETMEFFNQ 472
+ ++++VG +P +TEEE +F+Q
Sbjct: 108 RTKKIFVGGLPSSITEEEFKNYFDQ 132
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 29.1 bits (62), Expect = 2.9
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +2
Query: 398 QARRLYVGNIPFGVTEEETMEFFNQ 472
+ ++++VG +P +TEEE +F+Q
Sbjct: 108 RTKKIFVGGLPSSITEEEFKNYFDQ 132
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 29.1 bits (62), Expect = 2.9
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +2
Query: 398 QARRLYVGNIPFGVTEEETMEFFNQ 472
+ ++++VG +P +TEEE +F+Q
Sbjct: 108 RTKKIFVGGLPSSITEEEFKNYFDQ 132
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +2
Query: 395 RQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAG-NPVLACQINLDKNFAFLEFRS 571
R + +Y+GN+ F TEE+ E F++ + + N C F F+ F S
Sbjct: 31 RASTTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPC------GFCFVLFYS 84
Query: 572 IDETTQAMAF 601
++T A+ +
Sbjct: 85 REDTEDAVKY 94
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 29.1 bits (62), Expect = 2.9
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Frame = +2
Query: 332 PANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGN 511
P+ + Q+ VG T R+LYVGN+ F ++E + + F + L Q +
Sbjct: 242 PSEAEKNLAQSNSTTVGGTGPAD-RKLYVGNLHFNMSELQLRQIF-EAFGPVELVQLPLD 299
Query: 512 PVLACQINLDKNFAFLEFRSIDETTQA-MAFDG-INFKGQKLKDST 643
P + K F F++F ++ + A +A +G + G+ +K S+
Sbjct: 300 P----ETGQCKGFGFIQFVQLEHSKAAQIALNGKLEIAGRTIKVSS 341
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Frame = +2
Query: 380 GSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFL 559
G + R+YVGN+ +GV + F++Q + + K F F+
Sbjct: 196 GGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKV-----VEARVIYDRDSGRSKGFGFV 250
Query: 560 EFRSIDETTQAM-AFDGINFKGQKLKDS 640
+ S E A+ + DG + G++++ S
Sbjct: 251 TYDSSQEVQNAIKSLDGADLDGRQIRVS 278
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +2
Query: 407 RLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDET- 583
+L+VGN+PF V + + F ++ + + + + + F F+ S+ E
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVE-MVEVIYDKI----TGRSRGFGFVTMSSVSEVE 146
Query: 584 TQAMAFDGINFKGQKLK 634
A F+G G+ L+
Sbjct: 147 AAAQQFNGYELDGRPLR 163
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 404 RRLYVGNIPFGVTEEETMEFFNQ 472
R LYV N+PF +T EE + F +
Sbjct: 19 RVLYVRNLPFNITSEEMYDIFGK 41
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 28.7 bits (61), Expect = 3.8
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = +2
Query: 410 LYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQ 589
+YV N+ VTEEE + F+Q ++ + K F F+ F + +E
Sbjct: 306 IYVKNVNVAVTEEELRKHFSQ------CGTITSTKLMCDEKGKSKGFGFVCFSTPEEAID 359
Query: 590 AM-AFDGINFKGQKL 631
A+ F G F G+ L
Sbjct: 360 AVKTFHGQMFHGKPL 374
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 398 QARRLYVGNIPFGVTEEETMEFF 466
+ ++++VG IP VTE+E +FF
Sbjct: 107 KTKKIFVGGIPSTVTEDELKDFF 129
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 398 QARRLYVGNIPFGVTEEETMEFF 466
+ ++++VG IP VTE+E +FF
Sbjct: 107 KTKKIFVGGIPSTVTEDELKDFF 129
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/78 (24%), Positives = 35/78 (44%)
Frame = +2
Query: 401 ARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDE 580
+R ++V N+ FG T++ FN+ + A +P A++EF +
Sbjct: 515 SRTIFVANVHFGATKDSLSRHFNKFGEVL-KAFIVTDPA----TGQPSGSAYIEFTRKEA 569
Query: 581 TTQAMAFDGINFKGQKLK 634
A++ DG +F + LK
Sbjct: 570 AENALSLDGTSFMSRILK 587
>At2g20650.2 68415.m02422 zinc finger (C3HC4-type RING finger)
family protein
Length = 559
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +2
Query: 326 QIPANIVADTPQAAVP--VVGSTITRQARRLYVGNIP 430
QI AN+V D+ + P ++G T+TR A LYV P
Sbjct: 409 QIVANVVRDSRKPLHPYYILGMTVTRLAIPLYVFGCP 445
>At2g20650.1 68415.m02421 zinc finger (C3HC4-type RING finger)
family protein
Length = 559
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +2
Query: 326 QIPANIVADTPQAAVP--VVGSTITRQARRLYVGNIP 430
QI AN+V D+ + P ++G T+TR A LYV P
Sbjct: 409 QIVANVVRDSRKPLHPYYILGMTVTRLAIPLYVFGCP 445
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +2
Query: 401 ARRLYVGNIPFGVTEEE 451
ARR+Y+GNIP VT E+
Sbjct: 75 ARRVYIGNIPRTVTNEQ 91
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 398 QARRLYVGNIPFGVTEEETME 460
Q R ++VGNIP+ TEE+ E
Sbjct: 7 QRRCVFVGNIPYDATEEQLRE 27
>At1g53020.1 68414.m06002 ubiquitin-conjugating enzyme family
protein similar to ubiquitin-conjugating enzyme
GB:3319990 from [Mus musculus]; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 1163
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -1
Query: 164 NVFFLGIETFVGGLYLPPSYLRKYVIQ*LFLEI--VIKALQRY 42
NVF L ++T V + PP + +YV F+ ++KA Y
Sbjct: 421 NVFLLSLKTMVYSIRRPPQHFEEYVQNHYFVRSHDIVKACNAY 463
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -1
Query: 164 NVFFLGIETFVGGLYLPPSYLRKYVIQ*LFLEI--VIKALQRY 42
NVF L ++T V + PP + +YV F+ ++KA Y
Sbjct: 1041 NVFLLSLKTMVYSMRKPPQHFEEYVQNHYFVRSHDIVKACNAY 1083
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 398 QARRLYVGNIPFGVTEEETMEFFNQ 472
+ ++++VG IP V ++E EFF Q
Sbjct: 128 KTKKIFVGGIPSSVDDDEFKEFFMQ 152
>At4g04640.1 68417.m00679 ATP synthase gamma chain 1, chloroplast
(ATPC1) identical to SP|Q01908 ATP synthase gamma chain
1, chloroplast precursor (EC 3.6.3.14) {Arabidopsis
thaliana}
Length = 373
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/71 (23%), Positives = 30/71 (42%)
Frame = +2
Query: 266 PPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTE 445
PP ++PLQ + +I + A+ +V + R+A+ V PF T
Sbjct: 39 PPSRASSVSPLQASLRELRDRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETL 98
Query: 446 EETMEFFNQQM 478
E + N+Q+
Sbjct: 99 VEVLYNINEQL 109
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,259,651
Number of Sequences: 28952
Number of extensions: 307215
Number of successful extensions: 886
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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