Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0243
(686 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0508 + 4027113-4028522 35 0.070
01_01_0771 - 5982826-5983327,5983424-5984772 30 2.0
02_01_0752 - 5583757-5584092 29 2.6
11_04_0030 + 12510095-12510320,12510646-12510980,12511058-12511396 29 4.6
03_06_0146 - 31976538-31978643,31978653-31978751 29 4.6
01_01_0469 - 3456067-3456123,3456414-3456565,3456649-3456779,345... 29 4.6
12_01_0368 + 2815424-2815658,2816898-2817120,2818329-2818680,281... 28 6.0
11_01_0345 + 2579602-2579836,2581262-2581484,2582822-2583173,258... 28 6.0
03_05_0456 - 24498212-24499581,24502660-24503071 28 6.0
10_07_0061 + 12489552-12489674,12490761-12490836,12490916-124909... 28 8.0
09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,851... 28 8.0
05_05_0125 - 22561972-22562028,22562318-22562416,22562496-225626... 28 8.0
>12_01_0508 + 4027113-4028522
Length = 469
Score = 34.7 bits (76), Expect = 0.070
Identities = 19/37 (51%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -1
Query: 446 PVVDVATGGLA---TSTGFPFSLTNSVTVHSPLSCLY 345
PV ATGG A TSTGFPFS++ ++ V LS +Y
Sbjct: 60 PVEGAATGGRASHRTSTGFPFSVSLNLAVPPALSSIY 96
>01_01_0771 - 5982826-5983327,5983424-5984772
Length = 616
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 381 FCYSPFAVILPISEAILDYIRPEINLISQF 292
FCY+ FAV +P++ Y+R E+ ++ F
Sbjct: 132 FCYTEFAVEIPVAGGSFAYLRVELGDVAAF 161
>02_01_0752 - 5583757-5584092
Length = 111
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -1
Query: 575 NSSLKIKVPLQILSRPWTTVSDVWHVCSGLTIGVLACWGVCSGP 444
+S+ + V + L+ W V VWH C G++ C GV P
Sbjct: 69 SSAAVVTVQMPTLAS-WPPVVAVWHSCDNYVCGLVGCVGVDREP 111
>11_04_0030 + 12510095-12510320,12510646-12510980,12511058-12511396
Length = 299
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +1
Query: 415 ANPPVATSTTGPLQTPQQASTPIVRPEQTCQTSETVVQGRDKICKGTLIFSDE 573
++PP+A + LQT Q++ P +R E TS G+ K L+ SD+
Sbjct: 194 SDPPIAQRRSPRLQTGQESGGPKIRYETQPNTSNPA--GQSDSHKRKLVLSDD 244
>03_06_0146 - 31976538-31978643,31978653-31978751
Length = 734
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +1
Query: 394 NGNPVDVANPPVATSTTGPLQTPQQASTPIVRPEQTCQTSETVVQGRDKI 543
+GN D+A A +T P TP Q + + Q +E +V+ D I
Sbjct: 597 HGNSADMAGENSAAATAEPASTPSQFRQAMQQAAARDQAAEAMVRAADVI 646
>01_01_0469 -
3456067-3456123,3456414-3456565,3456649-3456779,
3456846-3458036,3458460-3458541,3458947-3458984,
3459091-3459250,3459356-3459557,3460245-3460329,
3460809-3460863,3461230-3461325,3461807-3461940,
3462031-3462043,3462315-3462419,3462935-3463121
Length = 895
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +1
Query: 157 DGFSLF---AFHGKLNEEMEGLESGHWSRDITKAKNGVWTFRDRNAQLKLGDKIYFW 318
DG SLF H K ++ LE+G+WS T+ + R+ + +L L +K W
Sbjct: 440 DGVSLFDNLEEHHKRTDDQNNLEAGYWSDKATEKQR----TREPSCRLSLKEKFSNW 492
>12_01_0368 +
2815424-2815658,2816898-2817120,2818329-2818680,
2819354-2819620
Length = 358
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -3
Query: 390 IDEFCYSPFAVILPISEAILDYIRPEINLISQF 292
+ FCY+ FAV +P++ Y+R ++ F
Sbjct: 52 LSAFCYTEFAVDMPVAGGAFSYLRVTFGELAAF 84
>11_01_0345 +
2579602-2579836,2581262-2581484,2582822-2583173,
2583894-2584125,2584683-2585266
Length = 541
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -3
Query: 390 IDEFCYSPFAVILPISEAILDYIRPEINLISQF 292
+ FCY+ FAV +P++ Y+R ++ F
Sbjct: 52 LSAFCYTEFAVDMPVAGGAFSYLRVTFGELAAF 84
>03_05_0456 - 24498212-24499581,24502660-24503071
Length = 593
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -3
Query: 402 IPIFIDEFCYSPFAVILPISEAILDYIRPEI 310
+ + FCY+ FAV +P++ Y+R E+
Sbjct: 118 VSAMLSVFCYTEFAVEIPVAGGSFAYLRVEL 148
>10_07_0061 +
12489552-12489674,12490761-12490836,12490916-12490980,
12491089-12491166,12492156-12492236,12492813-12492974,
12493328-12493426,12493509-12494797,12495063-12495286,
12495373-12495500,12495596-12495634,12495724-12497178
Length = 1272
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +1
Query: 394 NGNPVDVANPPVATSTTGPLQTPQQAS-TPIVRPEQTCQTSETVVQG 531
N NP V PPVA+S + + QQ S P R + ++ V G
Sbjct: 568 NSNPAVVGYPPVASSPSDSMHRMQQPSVAPSKRKSNSVPKTQPPVSG 614
>09_02_0393 +
8510089-8510274,8510450-8510806,8510889-8511011,
8511209-8511523,8511576-8511682,8512559-8512629,
8512952-8513029,8513390-8513454,8514224-8514274,
8514373-8514414,8514785-8515105,8515154-8517880
Length = 1480
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +1
Query: 154 DDGFSLFAFHGKLNEEMEGLESGHWSRDITKAKNGV-WTFRDRNAQLKLGDKIYFWTYVI 330
DD ++LF + E G R I + +GV + A L L + FW YV+
Sbjct: 801 DDSWALFCKLSFPDNACRETELGPIGRKIVEKSDGVPLVLKTLGAMLSLDTSLEFWNYVL 860
Query: 331 KDGL 342
L
Sbjct: 861 TSDL 864
>05_05_0125 -
22561972-22562028,22562318-22562416,22562496-22562624,
22563312-22563355,22563570-22563642,22563791-22563877,
22563985-22564069,22565460-22565533,22565612-22566192,
22566275-22568270
Length = 1074
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 152 QTMVSRSSLFTASSTKRWKAWN 217
+T SR SL + S++RW+ WN
Sbjct: 754 ETPTSRDSLGLSPSSRRWRLWN 775
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,323,871
Number of Sequences: 37544
Number of extensions: 444120
Number of successful extensions: 1474
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1473
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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