Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0243
(686 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_32564| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_47193| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_33251| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_17340| Best HMM Match : 7tm_3 (HMM E-Value=0) 30 1.5
SB_23230| Best HMM Match : WI12 (HMM E-Value=6.9) 29 2.7
SB_43623| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_43367| Best HMM Match : SAM_1 (HMM E-Value=0.085) 29 3.5
SB_52627| Best HMM Match : MSG (HMM E-Value=5.2) 28 6.2
SB_4713| Best HMM Match : WSC (HMM E-Value=1.8e-16) 28 6.2
SB_59633| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +1
Query: 388 NENGNPVDVANPPVATSTTGPLQTP 462
N GN PPV T TT P TP
Sbjct: 6100 NNKGNKTSTTEPPVTTPTTAPTTTP 6124
>SB_32564| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 153
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 244 KAKNGVWTFRDRNAQLKLGDKIYFWTYVI-KDGLGYRQDNGE 366
K K W D NA K+GD+ + + V+ K GLG R DNGE
Sbjct: 25 KFKPHKWRLCDMNA--KVGDQNWDYERVMGKHGLGVRNDNGE 64
>SB_47193| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 150
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = -3
Query: 324 IRPEINLISQF*LSISVSERPNAVFGFCDVPGPMSRFQAFHLFVELAV 181
+RPE++L + S+ V + F F P+S+ A+ + VELAV
Sbjct: 2 VRPELSLTGEASPSLRVEANQDVEFTFILQHTPVSKAHAYRVLVELAV 49
>SB_33251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 284
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 229 SRDITKAKNGVWTFRDRNAQLKLGDKIYFWTYVIKD 336
S D+T+ ++ VW D KL D + WT V+KD
Sbjct: 5 SSDVTEFESMVWRDGDVERSSKLMDGVVVWTGVLKD 40
>SB_17340| Best HMM Match : 7tm_3 (HMM E-Value=0)
Length = 890
Score = 30.3 bits (65), Expect = 1.5
Identities = 10/36 (27%), Positives = 24/36 (66%)
Frame = -1
Query: 644 IIGFFRKSNFSSPTRQILRLFFSNSSLKIKVPLQIL 537
++GF SN++ R I+ + + SS+K+++P+ ++
Sbjct: 306 VLGFIHISNYAWRLRSIVSVLKNRSSIKVRIPMLVI 341
>SB_23230| Best HMM Match : WI12 (HMM E-Value=6.9)
Length = 294
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = -1
Query: 611 SPTRQILRLFFSNSSLKIKVPLQILSRPWTTVSDVWHVCSGLTIGVLACWG 459
S T+ RL S S+L+ ++ L I RP V +++ +C + +ACWG
Sbjct: 224 STTQCRTRLGLSISTLRSRLTL-IHCRPSFKVRELFAICRSCRVLCIACWG 273
>SB_43623| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 475
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Frame = -1
Query: 506 WHVCSGLTIGVLACWGVCSGPVVDVAT----GGLATSTG 402
W+V + T GV CWG C + ++ GGL S+G
Sbjct: 312 WYVGAKTTSGVPQCWGYCQASSMKISLLSDYGGLKRSSG 350
>SB_43367| Best HMM Match : SAM_1 (HMM E-Value=0.085)
Length = 325
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +1
Query: 376 TEFVNENGNPVDVANPPVATSTTGPLQTPQQASTPIVRPEQT 501
T+ + N V V P+ PL P A TP+ RP T
Sbjct: 98 TDVLLFQSNSVRVLKSPLKDREPAPLPVPTMAPTPVPRPSDT 139
>SB_52627| Best HMM Match : MSG (HMM E-Value=5.2)
Length = 210
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -1
Query: 605 TRQILRL-FFSNSSLKIKVPLQILSRPWTTVSD 510
TR LR+ FS + + P ++ RPW TVSD
Sbjct: 6 TRSPLRVEHFSRHLSRDRTPSPVVKRPWKTVSD 38
>SB_4713| Best HMM Match : WSC (HMM E-Value=1.8e-16)
Length = 343
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = -3
Query: 465 LGCLQWTRGRCGHRWVGYVYWIPIFIDEF--CY 373
L CL+ T +CG W +Y + I + +F CY
Sbjct: 174 LNCLRNTNLKCGGDWANSIYRVAIKLSQFIGCY 206
>SB_59633| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 396
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 449 HCRHPNKPALLSLDRNRRAKRQKQWSK 529
H R+PNK +LL + R+ Q QW+K
Sbjct: 232 HPRYPNKRSLLQFESPPRSGCQIQWAK 258
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,045,743
Number of Sequences: 59808
Number of extensions: 505744
Number of successful extensions: 1295
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1292
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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