Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0241
         (505 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    21   4.7  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    21   8.3  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    21   8.3  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   8.3  

>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 351 PYLKGPQ*MSKPLVCVQ*AYEC 416
           P L+ P+   KPL+CV     C
Sbjct: 213 PLLRLPKFKKKPLLCVVSTLSC 234


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 345 SGPYLKGPQ*MSKPLVCVQ 401
           +GPY K    +S P VCV+
Sbjct: 318 AGPYSKEEGLLSYPEVCVK 336


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +2

Query: 206 GICTSEGVV 232
           G+CT EG+V
Sbjct: 441 GVCTKEGIV 449


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = -3

Query: 206 QLAVEPSLIASMAYSTWNSLP 144
           +L ++ + IA++AY T+ +LP
Sbjct: 144 RLNLKGNKIATIAYETFQNLP 164


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,780
Number of Sequences: 336
Number of extensions: 2927
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11944578
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)