Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0241
(505 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy... 69 3e-13
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom... 48 8e-07
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 43 2e-05
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch... 42 5e-05
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 32 0.056
SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyc... 30 0.17
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 29 0.30
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo... 25 4.9
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc... 25 6.5
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c... 25 8.5
>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 69.3 bits (162), Expect = 3e-13
Identities = 32/65 (49%), Positives = 43/65 (66%)
Frame = +2
Query: 188 LAPLPIGICTSEGVVLAVGERITSTLMEPTTIEKIVEVDRHIGCAVSGLMGDFRTLFERA 367
L IG+ T + VVL V +R+TS LME ++EK+ E+D HIGCA+SGL D RT+ E A
Sbjct: 33 LGSTAIGVKTKDAVVLGVEKRLTSPLMESHSVEKLFEIDSHIGCAISGLTADARTIIEHA 92
Query: 368 PVNVK 382
V +
Sbjct: 93 RVQTQ 97
Score = 59.7 bits (138), Expect = 2e-10
Identities = 42/121 (34%), Positives = 57/121 (47%)
Frame = +1
Query: 142 EGRLFQVEYAIEAIKLGSTANWHLYFGGSCFGRGRKDNFNFDGTHDH*KDC*SRSTHWLR 321
EGRLFQVEYAIEAIKLGSTA G ++ +H K S
Sbjct: 18 EGRLFQVEYAIEAIKLGSTAIGVKTKDAVVLGVEKRLTSPLMESHSVEKLFEIDSHIGCA 77
Query: 322 RFGSDGRLQDLI*KGPSECQNHWFVYNERMSVESCAQALSNLTIQFGDTDDDSRTAMSPA 501
G + +I + QNH F Y+E +ES Q++ +L ++FG+ +D MS
Sbjct: 78 ISGLTADARTIIEHARVQTQNHRFTYDEPQGIESTTQSICDLALRFGEGEDGEERIMSRP 137
Query: 502 F 504
F
Sbjct: 138 F 138
Score = 34.3 bits (75), Expect = 0.011
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +3
Query: 99 TRSEYDRGVNTFSP 140
TRSEYDRGVNTFSP
Sbjct: 4 TRSEYDRGVNTFSP 17
>SPCC1795.04c |||20S proteasome component alpha
7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 253
Score = 48.0 bits (109), Expect = 8e-07
Identities = 23/55 (41%), Positives = 36/55 (65%)
Frame = +2
Query: 203 IGICTSEGVVLAVGERITSTLMEPTTIEKIVEVDRHIGCAVSGLMGDFRTLFERA 367
IGI +GV+LA+ + +TS L++P +I VDRHIG A +G + D + + +RA
Sbjct: 37 IGIKCEDGVILALEKVVTSKLLKPRVNNRIGSVDRHIGIATTGFIPDGQHIVKRA 91
Score = 27.5 bits (58), Expect = 1.2
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 142 EGRLFQVEYAIEAIKLGST 198
+GRLFQ EYA +A++ ST
Sbjct: 17 DGRLFQAEYAYKAVENAST 35
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 43.2 bits (97), Expect = 2e-05
Identities = 23/68 (33%), Positives = 37/68 (54%)
Frame = +2
Query: 185 NLAPLPIGICTSEGVVLAVGERITSTLMEPTTIEKIVEVDRHIGCAVSGLMGDFRTLFER 364
N +GI ++GVVLA ++ TS L ++EK+ + IG SG+ DFR L ++
Sbjct: 29 NAGVTSVGIKATDGVVLATEKKPTSELAIGASLEKVCAITPDIGMVYSGMGPDFRVLVDK 88
Query: 365 APVNVKTT 388
+ +TT
Sbjct: 89 SRKVAQTT 96
Score = 25.4 bits (53), Expect = 4.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 145 GRLFQVEYAIEAIKLGSTA 201
G+L Q+EYA+ A+ G T+
Sbjct: 16 GKLVQIEYALNAVNAGVTS 34
>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 41.9 bits (94), Expect = 5e-05
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Frame = +2
Query: 185 NLAPLPIGICTSEGVVLAVGERITSTLME-PTTIEKIVEVDRHIGCAVSGLMGDFRTLFE 361
N A + +GI +G+VLA +++TS L+E + EK+ + ++ CAV+GL D L
Sbjct: 29 NHAGVALGIVAKDGIVLAAEKKVTSKLLEQEESAEKLYHIGDNMLCAVAGLTADANILIN 88
Query: 362 RA 367
A
Sbjct: 89 YA 90
Score = 29.9 bits (64), Expect = 0.23
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +1
Query: 142 EGRLFQVEYAIEAIKLGSTA 201
EGRL+QVEYA+EAI A
Sbjct: 15 EGRLYQVEYALEAINHAGVA 34
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 31.9 bits (69), Expect = 0.056
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +1
Query: 142 EGRLFQVEYAIEAIKLGS 195
+GRL QVEYA+EAIK GS
Sbjct: 16 QGRLHQVEYALEAIKQGS 33
>SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 30.3 bits (65), Expect = 0.17
Identities = 12/62 (19%), Positives = 30/62 (48%)
Frame = +2
Query: 182 SNLAPLPIGICTSEGVVLAVGERITSTLMEPTTIEKIVEVDRHIGCAVSGLMGDFRTLFE 361
+N +G+ + +++ L++ +T++ + + + IGC ++G + D R
Sbjct: 31 NNAGITSVGVTGKNCACVISQKKVPDKLIDASTVKHVFPITKGIGCVMTGSIADARAQVS 90
Query: 362 RA 367
RA
Sbjct: 91 RA 92
Score = 25.4 bits (53), Expect = 4.9
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +1
Query: 142 EGRLFQVEYAIEA 180
EGRL+QVEYA +A
Sbjct: 17 EGRLYQVEYAFKA 29
>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 29.5 bits (63), Expect = 0.30
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +1
Query: 142 EGRLFQVEYAIEAIKLGSTA 201
+GRL QVEY EA++ G+TA
Sbjct: 14 DGRLLQVEYGQEAVRRGTTA 33
>SPBC23E6.05 |arx1||ribosomal export complex Arx1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 417
Score = 25.4 bits (53), Expect = 4.9
Identities = 10/40 (25%), Positives = 21/40 (52%)
Frame = -3
Query: 242 PRPKQLPPKYKCQLAVEPSLIASMAYSTWNSLPSRAECVD 123
P P++ K +++P+ + S +TW+ +P A +D
Sbjct: 229 PAPEEETRKADVTNSLDPANVLSTELNTWHVMPKEAWLID 268
>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 919
Score = 25.0 bits (52), Expect = 6.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 206 GICTSEGVVLAVGERITSTLM 268
G+ T G+VLA+G IT+T M
Sbjct: 755 GLSTVIGIVLAIGTWITNTTM 775
>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 559
Score = 24.6 bits (51), Expect = 8.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 143 SRAECVDPAIILGTCKTFYY*GY 75
S AE VDP+ + G K +YY Y
Sbjct: 537 SNAELVDPSTLSGKDKFWYYIDY 559
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,198,609
Number of Sequences: 5004
Number of extensions: 48283
Number of successful extensions: 138
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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