Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0241
(505 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18614| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 5e-07
SB_39285| Best HMM Match : Proteasome (HMM E-Value=0) 42 4e-04
SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17) 39 0.002
SB_14578| Best HMM Match : Gal_Lectin (HMM E-Value=0.72) 33 0.18
SB_51198| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.71
SB_40369| Best HMM Match : HTH_7 (HMM E-Value=0.032) 29 2.2
SB_29947| Best HMM Match : Fasciclin (HMM E-Value=2.3e-33) 29 2.9
SB_53562| Best HMM Match : Exo_endo_phos (HMM E-Value=0.018) 28 5.0
SB_56087| Best HMM Match : Extensin_2 (HMM E-Value=0.29) 27 8.8
>SB_18614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 62
Score = 51.2 bits (117), Expect = 5e-07
Identities = 20/30 (66%), Positives = 24/30 (80%)
Frame = +1
Query: 382 NHWFVYNERMSVESCAQALSNLTIQFGDTD 471
NHWF YNE MS+ES QA+SNL ++FGD D
Sbjct: 1 NHWFTYNESMSLESITQAVSNLALEFGDDD 30
>SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)
Length = 215
Score = 41.5 bits (93), Expect = 4e-04
Identities = 21/61 (34%), Positives = 33/61 (54%)
Frame = +2
Query: 203 IGICTSEGVVLAVGERITSTLMEPTTIEKIVEVDRHIGCAVSGLMGDFRTLFERAPVNVK 382
+G+ + VVL V + + L EP T+ KI +D H+ A +GL D R L +A V +
Sbjct: 35 VGVRGNNIVVLGVERKAVAKLQEPRTVRKICTLDDHVLMAFAGLTADARILVNKARVECQ 94
Query: 383 T 385
+
Sbjct: 95 S 95
Score = 36.7 bits (81), Expect = 0.011
Identities = 32/103 (31%), Positives = 45/103 (43%), Gaps = 1/103 (0%)
Frame = +1
Query: 142 EGRLFQVEYAIEAIKLGSTANWHLYFGGSCFGRGRKDNFNFDGTHDH*KDC*SRSTHWLR 321
+G LFQVEYA EA+K GSTA G RK K C + H L
Sbjct: 15 DGHLFQVEYAQEAVKKGSTAVGVRGNNIVVLGVERKAVAKLQEPRTVRKIC-TLDDHVLM 73
Query: 322 RF-GSDGRLQDLI*KGPSECQNHWFVYNERMSVESCAQALSNL 447
F G + L+ K ECQ+H + +++E + ++ L
Sbjct: 74 AFAGLTADARILVNKARVECQSHKLTVEDPVTLEYITRFIATL 116
>SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17)
Length = 308
Score = 39.1 bits (87), Expect = 0.002
Identities = 20/55 (36%), Positives = 30/55 (54%)
Frame = +2
Query: 203 IGICTSEGVVLAVGERITSTLMEPTTIEKIVEVDRHIGCAVSGLMGDFRTLFERA 367
I I +GVV V + + S L E ++I +D HIG A++GL+ D R + A
Sbjct: 167 IAIRCKDGVVFGVEKLVLSKLYEYGANKRIFHIDTHIGMAIAGLIADSRQIVATA 221
Score = 27.1 bits (57), Expect = 8.8
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +1
Query: 142 EGRLFQVEYAIEAIKLGSTA 201
+GR+FQVEYA +A++ TA
Sbjct: 147 DGRVFQVEYANKAVENSGTA 166
>SB_14578| Best HMM Match : Gal_Lectin (HMM E-Value=0.72)
Length = 502
Score = 32.7 bits (71), Expect = 0.18
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Frame = -2
Query: 414 THTLIVHKPVVLTFTG-ALSNKVLKSPIRPETAQPMCRSTSTIFSMVVGSIKVEVILSPT 238
T T ++ V LT+ +S V S ET QP S+ T + + VE S +
Sbjct: 186 TDTTLLPAVVPLTYEPMVISGPVTSSQFVSETVQPSTTSSETTTTTLKEVKPVETPGSTS 245
Query: 237 AKTTPSEVQMPIGSG----AKFDS 178
+ T+ SEV IG+G AK DS
Sbjct: 246 SSTSQSEVSASIGTGTGNAAKHDS 269
>SB_51198| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1627
Score = 30.7 bits (66), Expect = 0.71
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -3
Query: 284 QWSWVPSKL-KLSFLPRPKQLPPKYKCQLAVEPSLIASMAYSTWNSLPSRAEC 129
Q W+P KL K ++ PKY C A++ L+ S + +SLPS C
Sbjct: 495 QMVWLPRKLPKHVYVLVSTLKDPKYACYPALKKLLLDSNCFVEVSSLPSEVAC 547
>SB_40369| Best HMM Match : HTH_7 (HMM E-Value=0.032)
Length = 509
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 248 RITSTLME-PTTIEKIVEVDRHIGCAVSGLMGDFRTLFER 364
R+T+T+ TTI ++ HIG + S G F T+ +R
Sbjct: 443 RVTTTISRVTTTISRVTTTISHIGTSTSSHTGTFNTIKQR 482
>SB_29947| Best HMM Match : Fasciclin (HMM E-Value=2.3e-33)
Length = 725
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -1
Query: 499 PVTWLSGYHRQCLQTV*LSWKGPEHMILHSYAHCTQTSGFD 377
P T L+GYH + G + H +AHC + +G D
Sbjct: 472 PGTCLAGYHGNNCDLRDMPCSGSTPLSCHIHAHCVRENGLD 512
>SB_53562| Best HMM Match : Exo_endo_phos (HMM E-Value=0.018)
Length = 721
Score = 27.9 bits (59), Expect = 5.0
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -3
Query: 305 DLLQQSFQWSWVPSKLKLSFL-PRPKQLPPKYKCQLAVEPSLIASMA 168
DL S + ++P LK + + P PKQ PPK K + SL +A
Sbjct: 496 DLYNSSLREGYLPPLLKRATVCPLPKQKPPKAKVSDILPISLTCQVA 542
>SB_56087| Best HMM Match : Extensin_2 (HMM E-Value=0.29)
Length = 403
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -3
Query: 272 VPSKLKLSFLPRPKQLPPKYKCQLAVEPSLIASMAYSTWNSLPS 141
+PS L L L P P K ++ PSL++ A S++ P+
Sbjct: 353 IPSDLSLVSLQAPPSYPYKLLPRIPTSPSLVSLQASSSYPFKPT 396
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,567,558
Number of Sequences: 59808
Number of extensions: 370343
Number of successful extensions: 960
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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