Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0241
(505 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79754-8|CAB02097.1| 248|Caenorhabditis elegans Hypothetical pr... 67 6e-12
Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical pr... 41 4e-04
Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical pr... 38 0.003
AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome al... 35 0.039
AF036694-1|AAB88344.1| 260|Caenorhabditis elegans Proteasome al... 31 0.47
L23648-7|AAA28031.2| 962|Caenorhabditis elegans Abnormal cell l... 29 1.9
AF104917-1|AAD22772.1| 962|Caenorhabditis elegans LIN-36 protein. 29 1.9
AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical ... 29 2.5
Z92825-4|CAB07312.1| 467|Caenorhabditis elegans Hypothetical pr... 28 3.3
Z66514-3|CAA91343.1| 854|Caenorhabditis elegans Hypothetical pr... 28 3.3
U88314-2|AAF99884.2| 461|Caenorhabditis elegans Let-23 fertilit... 28 3.3
AY342006-1|AAQ22724.1| 854|Caenorhabditis elegans TRP-3 channel... 28 3.3
AJ276029-1|CAC81656.1| 854|Caenorhabditis elegans TRP homologou... 28 3.3
AF045613-1|AAC38962.1| 461|Caenorhabditis elegans inositol tris... 28 3.3
Z48544-9|CAA88436.2| 250|Caenorhabditis elegans Hypothetical pr... 27 5.8
AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans trithorax-rel... 27 5.8
AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell... 27 5.8
AF045639-8|AAC02566.1| 649|Caenorhabditis elegans Hypothetical ... 27 7.7
>Z79754-8|CAB02097.1| 248|Caenorhabditis elegans Hypothetical
protein F25H2.9 protein.
Length = 248
Score = 67.3 bits (157), Expect = 6e-12
Identities = 45/122 (36%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
Frame = +1
Query: 142 EGRLFQVEYAIEAIKLGSTANWHLYFGGSCFGRGRKDNFNFDGTHDH*KDC*SRSTHWLR 321
EGRLFQVEYAIEA+KLGST+ G ++ +D + H
Sbjct: 18 EGRLFQVEYAIEAVKLGSTSIGIKTSEGVLLAAEKRSTSKLM-VNDAIEKISKVDQHIGV 76
Query: 322 RF-GSDGRLQDLI*KGPSECQNHWFVYNERMSVESCAQALSNLTIQFGDTDDDSRTAMSP 498
F G + L+ + E QN WF YN ++ VE Q+++NL +QFG DDD + +MS
Sbjct: 77 TFAGLIADSRTLVERAQIEAQNFWFTYNRKIRVEDVTQSVANLALQFG--DDDVKASMSR 134
Query: 499 AF 504
F
Sbjct: 135 PF 136
Score = 64.1 bits (149), Expect = 6e-11
Identities = 34/65 (52%), Positives = 42/65 (64%)
Frame = +2
Query: 188 LAPLPIGICTSEGVVLAVGERITSTLMEPTTIEKIVEVDRHIGCAVSGLMGDFRTLFERA 367
L IGI TSEGV+LA +R TS LM IEKI +VD+HIG +GL+ D RTL ERA
Sbjct: 33 LGSTSIGIKTSEGVLLAAEKRSTSKLMVNDAIEKISKVDQHIGVTFAGLIADSRTLVERA 92
Query: 368 PVNVK 382
+ +
Sbjct: 93 QIEAQ 97
Score = 34.3 bits (75), Expect = 0.051
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +3
Query: 99 TRSEYDRGVNTFSP 140
TRSEYDRGVNTFSP
Sbjct: 4 TRSEYDRGVNTFSP 17
>Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical
protein D1054.2 protein.
Length = 231
Score = 41.1 bits (92), Expect = 4e-04
Identities = 21/55 (38%), Positives = 33/55 (60%)
Frame = +2
Query: 203 IGICTSEGVVLAVGERITSTLMEPTTIEKIVEVDRHIGCAVSGLMGDFRTLFERA 367
+G+ +GVVLA E + S L + K+ ++ +HIGC SG+ DFR L ++A
Sbjct: 35 VGLRAKDGVVLAT-ENVGSVLTDDQP--KVEQISKHIGCVYSGMGPDFRILVKKA 86
>Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical
protein C36B1.4 protein.
Length = 253
Score = 38.3 bits (85), Expect = 0.003
Identities = 18/61 (29%), Positives = 33/61 (54%)
Frame = +2
Query: 203 IGICTSEGVVLAVGERITSTLMEPTTIEKIVEVDRHIGCAVSGLMGDFRTLFERAPVNVK 382
+G+ + +V+ V ++ L + TI KI +D H+ A +GL D R L +RA + +
Sbjct: 34 VGVRGKDCIVIGVEKKSIPALQDDRTIRKIHMIDDHVMLAFAGLSADARVLVDRARIECQ 93
Query: 383 T 385
+
Sbjct: 94 S 94
Score = 33.9 bits (74), Expect = 0.067
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = +1
Query: 142 EGRLFQVEYAIEAIKLGSTA 201
+G LFQVEYA EA+K GSTA
Sbjct: 14 DGHLFQVEYAQEAVKKGSTA 33
>AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome alpha
subunit protein 3 protein.
Length = 250
Score = 34.7 bits (76), Expect = 0.039
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +2
Query: 203 IGICTSEGVVLAVGERITSTLMEPTTI-EKIVEVDRHIGCAVSGLMGDFRTL 355
+GI +SEG+V+A + L++ + + EK+ + +I C V+G+ D L
Sbjct: 35 LGILSSEGIVVAAERKNVHKLLDDSVMTEKVYRLSDNISCTVAGITADANIL 86
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +1
Query: 142 EGRLFQVEYAIEAIKLGST 198
EGRL+QVEYA+EAI T
Sbjct: 15 EGRLYQVEYAMEAISHAGT 33
>AF036694-1|AAB88344.1| 260|Caenorhabditis elegans Proteasome alpha
subunit protein 6 protein.
Length = 260
Score = 31.1 bits (67), Expect = 0.47
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = +1
Query: 142 EGRLFQVEYAIEAIKLGS 195
+GRL QVEYA+EA+K GS
Sbjct: 16 QGRLHQVEYAVEAMKQGS 33
Score = 29.1 bits (62), Expect = 1.9
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +2
Query: 203 IGICTSEGVVLAVGERITSTLMEPTTIEKIVEVDRHIGCAVSGLMGDFRTL 355
+GI + V+ +R + L +K+ E+D H G +++GL+ D R L
Sbjct: 36 VGIKSETHAVIVALKRAQNDLSSHQ--KKVYEIDTHAGVSIAGLLSDGRIL 84
>L23648-7|AAA28031.2| 962|Caenorhabditis elegans Abnormal cell
lineage protein 36 protein.
Length = 962
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = -2
Query: 396 HKPVVLTFTGALSNKVLKSPIRPETAQPMCRSTSTIFSMVVGSIKVEVILSPTAKTTPSE 217
+K ++ + G +S + PI E C + + V V +SP KTTPS+
Sbjct: 200 YKDILRSKMGPVSFSIAAGPICTEHFAEECFRNHNFNKSAIEAFGVPVAISPDVKTTPSK 259
>AF104917-1|AAD22772.1| 962|Caenorhabditis elegans LIN-36 protein.
Length = 962
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = -2
Query: 396 HKPVVLTFTGALSNKVLKSPIRPETAQPMCRSTSTIFSMVVGSIKVEVILSPTAKTTPSE 217
+K ++ + G +S + PI E C + + V V +SP KTTPS+
Sbjct: 200 YKDILRSKMGPVSFSIAAGPICTEHFAEECFRNHNFNKSAIEAFGVPVAISPDVKTTPSK 259
>AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical
protein Y53F4B.9 protein.
Length = 1168
Score = 28.7 bits (61), Expect = 2.5
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Frame = -2
Query: 351 VLKSPIRPETAQPMCRSTSTIFSM---VVGSIKVEVILSPTAKTTPSEVQMPIGSGAKFD 181
V+ SP PE + +TIFS VVG+ K+ + K+TP Q P SG F
Sbjct: 551 VISSPEAPENGK-----LATIFSKSTPVVGNKKMLELKKAETKSTPPTSQKPSSSGPVFS 605
Query: 180 SF 175
F
Sbjct: 606 IF 607
>Z92825-4|CAB07312.1| 467|Caenorhabditis elegans Hypothetical
protein C13C4.6 protein.
Length = 467
Score = 28.3 bits (60), Expect = 3.3
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = +3
Query: 57 VVVSSRVPLIVKC---FTRSEYDRGVNTFSP*RKAVPSGICHRSYQTWLHCQLAFVL 218
V+V + + +I+ C T + GV T P ++++ +G+ + Q WL C L F++
Sbjct: 342 VIVCTLLSIIMSCCAIHTPIGNEMGVETTYPVQESISTGVLNTFGQAWLFC-LYFIM 397
>Z66514-3|CAA91343.1| 854|Caenorhabditis elegans Hypothetical
protein K01A11.4 protein.
Length = 854
Score = 28.3 bits (60), Expect = 3.3
Identities = 18/69 (26%), Positives = 29/69 (42%)
Frame = -3
Query: 290 SFQWSWVPSKLKLSFLPRPKQLPPKYKCQLAVEPSLIASMAYSTWNSLPSRAECVDPAII 111
+F W W + L FL K+ + A +PS + M + ++ C+ A +
Sbjct: 427 AFWWRWFDAALIFIFLFSLIFFTGKWGKREAFDPSSVDRMHWPSFEFSLLHEICLAIACV 486
Query: 110 LGTCKTFYY 84
L K FYY
Sbjct: 487 LSILKCFYY 495
>U88314-2|AAF99884.2| 461|Caenorhabditis elegans Let-23 fertility
effector/regulatorprotein 2, isoform c protein.
Length = 461
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -3
Query: 281 WSWV-PSKLKLSFLPRPKQLPPKYKCQLAVEPSLIASMAYSTWNSLPSRAEC 129
WSW S + + RPK+LP K + +++ + W +P+ + C
Sbjct: 24 WSWGGSSNSEEKRMKRPKKLPSKLRLKISGNQRRRRDDTFVVWEEIPTPSVC 75
>AY342006-1|AAQ22724.1| 854|Caenorhabditis elegans TRP-3 channel
protein protein.
Length = 854
Score = 28.3 bits (60), Expect = 3.3
Identities = 18/69 (26%), Positives = 29/69 (42%)
Frame = -3
Query: 290 SFQWSWVPSKLKLSFLPRPKQLPPKYKCQLAVEPSLIASMAYSTWNSLPSRAECVDPAII 111
+F W W + L FL K+ + A +PS + M + ++ C+ A +
Sbjct: 427 AFWWRWFDAALIFIFLFSLIFFTGKWGKREAFDPSSVDRMHWPSFEFSLLHEICLAIACV 486
Query: 110 LGTCKTFYY 84
L K FYY
Sbjct: 487 LSILKCFYY 495
>AJ276029-1|CAC81656.1| 854|Caenorhabditis elegans TRP homologous
cation channel proteinprotein.
Length = 854
Score = 28.3 bits (60), Expect = 3.3
Identities = 18/69 (26%), Positives = 29/69 (42%)
Frame = -3
Query: 290 SFQWSWVPSKLKLSFLPRPKQLPPKYKCQLAVEPSLIASMAYSTWNSLPSRAECVDPAII 111
+F W W + L FL K+ + A +PS + M + ++ C+ A +
Sbjct: 427 AFWWRWFDAALIFIFLFSLIFFTGKWGKREAFDPSSVDRMHWPSFEFSLLHEICLAIACV 486
Query: 110 LGTCKTFYY 84
L K FYY
Sbjct: 487 LSILKCFYY 495
>AF045613-1|AAC38962.1| 461|Caenorhabditis elegans inositol
trisphosphate 3-kinaseform 3 protein.
Length = 461
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -3
Query: 281 WSWV-PSKLKLSFLPRPKQLPPKYKCQLAVEPSLIASMAYSTWNSLPSRAEC 129
WSW S + + RPK+LP K + +++ + W +P+ + C
Sbjct: 24 WSWGGSSNSEEKRMKRPKKLPSKLRLKISGNQRRRRDDTFVVWEEIPTPSVC 75
>Z48544-9|CAA88436.2| 250|Caenorhabditis elegans Hypothetical
protein ZK945.2 protein.
Length = 250
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +1
Query: 115 IAGSTHSALEGRLFQVEYAIEAIKLGST 198
+A ST S +GR+FQVEYA +A+ T
Sbjct: 10 LAASTFSP-DGRIFQVEYAQKAVDNAGT 36
>AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans
trithorax-related protein LIN-59 protein.
Length = 1312
Score = 27.5 bits (58), Expect = 5.8
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = +1
Query: 112 MIAGSTHSALEGRLFQVEYAIEAIKLGSTANWHL 213
++ GSTH+ ++ LF + + + S NW++
Sbjct: 119 VVNGSTHAVVKANLFPIGTTPPVLNMQSNQNWYM 152
>AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell
lineage protein 59 protein.
Length = 1312
Score = 27.5 bits (58), Expect = 5.8
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = +1
Query: 112 MIAGSTHSALEGRLFQVEYAIEAIKLGSTANWHL 213
++ GSTH+ ++ LF + + + S NW++
Sbjct: 119 VVNGSTHAVVKANLFPIGTTPPVLNMQSNQNWYM 152
>AF045639-8|AAC02566.1| 649|Caenorhabditis elegans Hypothetical
protein B0212.1 protein.
Length = 649
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = -2
Query: 345 KSPIRPETAQPMCRSTSTIF-SMVVGSIKVEVILSPTAKTT 226
++P++ E A PM RS ++F S ++ + V P+A+T+
Sbjct: 13 RNPVKAEAASPMGRSLRSLFQSAMMRLLSVAENAGPSARTS 53
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,227,812
Number of Sequences: 27780
Number of extensions: 274905
Number of successful extensions: 726
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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