Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0241
         (505 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.0  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   2.4  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   5.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   5.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   5.5  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   7.3  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    21   9.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -1

Query: 112 YSERVKHFTIRGTLDDTTTLLMRVFSQALTYFNL 11
           Y   +KH     TLDD +T   RV  Q ++   +
Sbjct: 295 YQAFLKHLNTEHTLDDRSTAQARVRMQVVSQLEI 328


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 20/68 (29%), Positives = 32/68 (47%)
 Frame = -2

Query: 426 T*FYTHTLIVHKPVVLTFTGALSNKVLKSPIRPETAQPMCRSTSTIFSMVVGSIKVEVIL 247
           T FYT  LI+  P V    G     VL   +  ++ + +  S S + S+ V  + +  I+
Sbjct: 236 TLFYTVNLII--PCV----GISFLSVLVFYLPSDSGEKVSLSISILLSLTVFFLLLAEII 289

Query: 246 SPTAKTTP 223
            PT+ T P
Sbjct: 290 PPTSLTVP 297


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +1

Query: 145 GRLFQVEYAIEAIKLGSTANWHLYFGGSCF 234
           G+LF  E    A ++   ANW  Y    C+
Sbjct: 193 GQLFMEETLKAAKRMRPAANWGYYAYPYCY 222


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 367  PSECQNHWFVYNERMSVESCA 429
            P+    H F+Y+E    E CA
Sbjct: 1732 PNNTLLHSFMYHEHAMTEGCA 1752


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 367  PSECQNHWFVYNERMSVESCA 429
            P+    H F+Y+E    E CA
Sbjct: 1728 PNNTLLHSFMYHEHAMTEGCA 1748


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 246 SPTAKTTPSEVQMPIGS 196
           S TA  TP+   +P+GS
Sbjct: 45  STTAAATPTPPSVPVGS 61


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 256 SYPFSHGQNNSLRSTN 209
           ++ +SHG  N  RST+
Sbjct: 23  TFTYSHGWTNGKRSTS 38


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,073
Number of Sequences: 438
Number of extensions: 3100
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)