Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0239
         (629 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF292049-1|AAG41145.1|  172|Caenorhabditis elegans 5C820 protein.      28   6.3  
AF039045-3|AAV58877.1|  172|Caenorhabditis elegans Hypothetical ...    28   6.3  
AF039045-2|AAO38660.2|  217|Caenorhabditis elegans Hypothetical ...    28   6.3  
Z81515-5|CAB04193.2|  238|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>AF292049-1|AAG41145.1|  172|Caenorhabditis elegans 5C820 protein.
          Length = 172

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +1

Query: 169 YNTGYETSNGIKAQETGQLKNIGTENEALEVRGEFAYIGPDGVPYAVTYVA 321
           YNTG+ T+ G+   +    K I  E E    R  F     DG+PY+  + A
Sbjct: 66  YNTGFFTT-GVDNWKVHGTKLIQVETEGTIARNIFGKFFVDGLPYSTGHGA 115


>AF039045-3|AAV58877.1|  172|Caenorhabditis elegans Hypothetical
           protein F15E11.15b protein.
          Length = 172

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +1

Query: 169 YNTGYETSNGIKAQETGQLKNIGTENEALEVRGEFAYIGPDGVPYAVTYVA 321
           YNTG+ T+ G+   +    K I  E E    R  F     DG+PY+  + A
Sbjct: 66  YNTGFFTT-GVDNWKVHGTKLIQVETEGTIARNIFGKFFVDGLPYSTGHGA 115


>AF039045-2|AAO38660.2|  217|Caenorhabditis elegans Hypothetical
           protein F15E11.15a protein.
          Length = 217

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +1

Query: 169 YNTGYETSNGIKAQETGQLKNIGTENEALEVRGEFAYIGPDGVPYAVTYVA 321
           YNTG+ T+ G+   +    K I  E E    R  F     DG+PY+  + A
Sbjct: 111 YNTGFFTT-GVDNWKVHGTKLIQVETEGTIARNIFGKFFVDGLPYSTGHGA 160


>Z81515-5|CAB04193.2|  238|Caenorhabditis elegans Hypothetical
           protein F26H11.5 protein.
          Length = 238

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 172 NTGYETSNGIKAQETGQLKNIGTENEALE 258
           NTG     GI A+E+G+ +   TE++ L+
Sbjct: 58  NTGLRRMPGISAEESGETQTFETEDDILD 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,905,325
Number of Sequences: 27780
Number of extensions: 209217
Number of successful extensions: 492
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)