Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0239
         (629 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g04950.1 68418.m00524 nicotianamine synthase, putative simila...    28   5.9  
At4g31780.2 68417.m04510 1,2-diacylglycerol 3-beta-galactosyltra...    27   7.8  
At4g31780.1 68417.m04509 1,2-diacylglycerol 3-beta-galactosyltra...    27   7.8  

>At5g04950.1 68418.m00524 nicotianamine synthase, putative similar
           to nicotianamine synthase [Lycopersicon
           esculentum][GI:4753801], nicotianamine synthase 2
           [Hordeum vulgare][GI:4894912]
          Length = 320

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -1

Query: 626 ARRLSW-VTPGVSQSRRCKRRPVNCNTTH 543
           AR+L    TPGV+ +R C   P NC+  H
Sbjct: 273 ARKLGGPTTPGVNGTRGCMFMPCNCSKIH 301


>At4g31780.2 68417.m04510 1,2-diacylglycerol
           3-beta-galactosyltransferase, putative /
           monogalactosyldiacylglycerol synthase, putative / MGDG
           synthase, putative similar to MGD synthase type A from
           Arabidopsis thaliana [gi:9927297], similar to
           monogalactosyldiacylglycerol synthase, Cucumis sativus,
           PID:g1805254
          Length = 533

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = -3

Query: 345 RRLESTLVSDVGHSVRNSVRADVRKFSADLKSFV-FSANVLQLTGFLSLDSVG 190
           RR+  TL S +  + ++S  + +R+F +D  SF+ F  + +    F S+  VG
Sbjct: 58  RRMGKTLAS-LSFNTKSSAGSSLRRFISDFNSFIRFHCDKVVPESFASVGGVG 109


>At4g31780.1 68417.m04509 1,2-diacylglycerol
           3-beta-galactosyltransferase, putative /
           monogalactosyldiacylglycerol synthase, putative / MGDG
           synthase, putative similar to MGD synthase type A from
           Arabidopsis thaliana [gi:9927297], similar to
           monogalactosyldiacylglycerol synthase, Cucumis sativus,
           PID:g1805254
          Length = 504

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = -3

Query: 345 RRLESTLVSDVGHSVRNSVRADVRKFSADLKSFV-FSANVLQLTGFLSLDSVG 190
           RR+  TL S +  + ++S  + +R+F +D  SF+ F  + +    F S+  VG
Sbjct: 58  RRMGKTLAS-LSFNTKSSAGSSLRRFISDFNSFIRFHCDKVVPESFASVGGVG 109


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,250,450
Number of Sequences: 28952
Number of extensions: 193603
Number of successful extensions: 437
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)