Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0238
         (478 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S...   150   9e-38
SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac...   150   1e-37
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    28   0.84 
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    27   1.9  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    27   1.9  
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    26   2.6  
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    25   4.5  
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy...    25   7.9  
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy...    25   7.9  
SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyce...    25   7.9  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    25   7.9  

>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 132

 Score =  150 bits (364), Expect = 9e-38
 Identities = 70/105 (66%), Positives = 86/105 (81%)
 Frame = +3

Query: 27  QEAAKIIIEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGI 206
           + A++++IEKYY RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R++   VRGI
Sbjct: 10  KRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGI 69

Query: 207 SIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNI 341
           S KLQEEERER+D YVPEVS LE D I VD DTKDMLK L +++I
Sbjct: 70  SFKLQEEERERKDQYVPEVSELEKDKINVDQDTKDMLKALGYDSI 114


>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 131

 Score =  150 bits (363), Expect = 1e-37
 Identities = 72/116 (62%), Positives = 91/116 (78%)
 Frame = +3

Query: 27  QEAAKIIIEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGI 206
           + A++++IEKYY RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R++   VRGI
Sbjct: 10  KRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGI 69

Query: 207 SIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQPATQ 374
           S KLQEEERER+D YVPEVS LE D + VD DTKDMLK L ++ I  +++  PA Q
Sbjct: 70  SFKLQEEERERKDQYVPEVSELEVDRVNVDQDTKDMLKSLGYDQI-PVRVLAPAPQ 124


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 27.9 bits (59), Expect = 0.84
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = -3

Query: 353 LQAINIVEVQHLQHILGVGVYFDDVMFESRHFWDIVVTPLTLLFL-KFDR-DSSHL 192
           L+  NI+E +++  +    +YF+  M  + +FW I   P  +L   KF + ++SHL
Sbjct: 368 LEVKNIIEQRNVTTMENCNLYFNPEMPTTIYFWKIYSAPTWMLARPKFSQINTSHL 423


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 189 SQVRGISIKLQEEERERRDNYVPEV 263
           S V  ISIK QEEER+R+     E+
Sbjct: 351 SHVDSISIKAQEEERKRQAEIEKEI 375


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 174 RRLRHSQVRGISIKLQEEERERRDNYVPEVS 266
           R+   S+ R  S KL EEER+RR  +V +++
Sbjct: 218 RKRSRSRPRERSSKLSEEERDRRTVFVSQLA 248


>SPBC215.08c |arg4||carbamoyl-phosphate synthase
           Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 317 QHILGVGVYFDDVMFESRHFWDIVVTPLTLLFLKFDRD 204
           Q  L VG+  DD+   +R+   ++ TP++ L    DRD
Sbjct: 172 QTALNVGIQLDDMGVFARNHVKVLGTPISTLKTSEDRD 209


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 154 PAILFLRGLVGMIAISSHILLFVSK 80
           P I  LRGLV   A   H+L F++K
Sbjct: 457 PIIAQLRGLVNESAPGKHVLTFLNK 481


>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 108 EIAIIPTKPLRNKIAGFATHLMRRLRHSQVR 200
           EIA++ TKP  + I G       RL  S++R
Sbjct: 209 EIAVVSTKPTDSGIVGVPGGHFCRLSQSEIR 239


>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 386

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +3

Query: 234 ERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGL 350
           +R D    E + ++ +   +DPD KD+  +++ N  N +
Sbjct: 303 DRFDKVEEEYTPIKDERELIDPDQKDVFDLVNDNQFNDI 341


>SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 218

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 7/28 (25%), Positives = 17/28 (60%)
 Frame = +3

Query: 213 KLQEEERERRDNYVPEVSALEHDIIEVD 296
           + + +E+ RRD     +  L+H+I+ ++
Sbjct: 102 RARRKEKNRRDEVAEAILGLQHEIVRIN 129


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 180 LRHSQVRGISIKLQEEERERRDNYVPEVSALEH 278
           L++  +     K Q+  ++R D +  EVSA++H
Sbjct: 853 LKYKSLVSFMFKEQDANKKREDFHSGEVSAIQH 885


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,759,622
Number of Sequences: 5004
Number of extensions: 32169
Number of successful extensions: 96
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)