Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0238
         (478 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal pr...   144   2e-35
AC006605-8|AAK85439.2|  741|Caenorhabditis elegans Ligase protei...    31   0.57 
AC006648-9|AAF39858.2|  306|Caenorhabditis elegans Btb and math ...    29   2.3  
AF225921-1|AAF36687.1|  335|Caenorhabditis elegans secretory car...    28   3.0  
AF106577-10|AAC78189.1|  796|Caenorhabditis elegans Hypothetical...    28   3.0  
AF003739-8|AAK84628.1|  335|Caenorhabditis elegans Scamp (synapt...    28   3.0  
U00052-7|AAK21422.2|  232|Caenorhabditis elegans Fatty acid/reti...    28   4.0  
Z81139-7|CAI46624.1|  358|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z35637-3|CAA84689.1|  244|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 17 protein.
          Length = 130

 Score =  144 bits (350), Expect = 2e-35
 Identities = 67/106 (63%), Positives = 85/106 (80%), Gaps = 3/106 (2%)
 Frame = +3

Query: 27  QEAAKIIIEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGI 206
           ++A++++IEKYYTR+T DF  NKR+C+E+AII +KPLRNKIAG+ THLMRR+    VRGI
Sbjct: 10  KKASRVLIEKYYTRMTNDFHNNKRVCDEVAIIGSKPLRNKIAGYITHLMRRIERGPVRGI 69

Query: 207 SIKLQEEERERRDNYVPEVSALEHD---IIEVDPDTKDMLKMLDFN 335
           SIKLQEEERERRDNY+PE+S ++      I+VD DT DMLK   FN
Sbjct: 70  SIKLQEEERERRDNYMPEISTVDPSQLTSIKVDTDTSDMLKAAGFN 115


>AC006605-8|AAK85439.2|  741|Caenorhabditis elegans Ligase protein 4
           protein.
          Length = 741

 Score = 30.7 bits (66), Expect = 0.57
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = +1

Query: 130 SLLGIKLLDLPHI**GVSDT--RKCEESLSNFRKRSVRGVTTMSQKCL 267
           SL GI++  L     G S+T  RKCEE L +F    V+G+T  ++ C+
Sbjct: 641 SLTGIEVAVLQ----GTSETIRRKCEEILKHFDATVVKGITPSTKLCI 684


>AC006648-9|AAF39858.2|  306|Caenorhabditis elegans Btb and math
           domain containingprotein 3 protein.
          Length = 306

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +1

Query: 148 LLDLPHI**GVSDTRKCEESLSNFRKRSVRGVTTMSQKCLLSNMTSS 288
           +L L H+      TRKCEE L +F ++ ++    +++K  L N+  S
Sbjct: 222 ILHLAHMYDMPFPTRKCEEFLIDFSEKPIKEKLKVAKKYQLENLKKS 268


>AF225921-1|AAF36687.1|  335|Caenorhabditis elegans secretory
           carrier membrane protein protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 126 TKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERR 242
           T  L NK AG    L R+ +  + R   ++++EEE +RR
Sbjct: 57  TGSLGNKSAGMDDELFRKQQDLERRAQELRMREEELDRR 95


>AF106577-10|AAC78189.1|  796|Caenorhabditis elegans Hypothetical
           protein F46F5.11 protein.
          Length = 796

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
 Frame = +3

Query: 198 RGISIKLQEEERERRDN----YVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQL 356
           RG  ++  E+ + R D+    Y  + +A++  ++  DPD   + ++L  ++ NGL L
Sbjct: 187 RGFPLEHIEKHKNRNDSQVLCYEMKRAAVQQGLVHHDPDVDAIYRLLHADSKNGLNL 243


>AF003739-8|AAK84628.1|  335|Caenorhabditis elegans Scamp (synaptic
           vesicle protein)homolog protein 1 protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 126 TKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERR 242
           T  L NK AG    L R+ +  + R   ++++EEE +RR
Sbjct: 57  TGSLGNKSAGMDDELFRKQQDLERRAQELRMREEELDRR 95


>U00052-7|AAK21422.2|  232|Caenorhabditis elegans Fatty acid/retinol
           binding proteinprotein 8 protein.
          Length = 232

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 152 WICHTFNEASQTLASARNLYQTSGRGA 232
           W CH FN A   ++ A+ L Q     A
Sbjct: 150 WACHIFNNAKSAVSGAKALLQDDSEAA 176


>Z81139-7|CAI46624.1|  358|Caenorhabditis elegans Hypothetical
           protein W05H5.5 protein.
          Length = 358

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +3

Query: 303 TKDMLKMLDFNNINGLQL 356
           T D+ KML+ NN+NGL+L
Sbjct: 107 TDDIGKMLNVNNLNGLEL 124


>Z35637-3|CAA84689.1|  244|Caenorhabditis elegans Hypothetical
           protein C03C10.4 protein.
          Length = 244

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = +3

Query: 168 LMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALE 275
           ++ R  +SQ+  +SI L+ E +ER+D+Y   + ALE
Sbjct: 183 VLTRTMNSQLELMSI-LEHEVQERKDSYSDSMRALE 217


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,623,942
Number of Sequences: 27780
Number of extensions: 175282
Number of successful extensions: 543
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)