Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0236
         (658 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    26   0.31 
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    25   0.41 
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           25   0.55 
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    25   0.72 

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 25.8 bits (54), Expect = 0.31
 Identities = 15/71 (21%), Positives = 26/71 (36%)
 Frame = +1

Query: 223  KPATTSEPTTHAKPTTDSEPATNAKPTTDAEPATYAKSTTNADSATNAESATDAESATNA 402
            +P T + P       T +    +  P    +P+T+  STT +   T   +     +    
Sbjct: 1008 EPVTPAPPQVTTGVDTGASSTEHMHPDWTTKPSTWWSSTTTSPWWTTTTTRRTTTTRPTT 1067

Query: 403  ESATDAESATN 435
             S T   + TN
Sbjct: 1068 TSTTTRPTTTN 1078


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 0.41
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
 Frame = +1

Query: 229 ATTSEPTTHAKPTTDSEPATNAKPTTD---AEPATYAKSTTNADSA-TNAESATDAESAT 396
           AT S   T     + S P   A  TT    + PA+   ST++ + A TN  ++  ++S+ 
Sbjct: 137 ATKSSGLTSPLSVSTSPPGKPATSTTSQNLSSPASSTSSTSSTEKAGTNNNNSKSSQSSN 196

Query: 397 NAESATDAESATNAESATNAKSTTNAE 477
             +     +     +S  NA   T  +
Sbjct: 197 PPQIYPWMKRVHLGQSTVNANGETKRQ 223


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 25.0 bits (52), Expect = 0.55
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 237 FRTNNTCKTNNRFRTSNKCKANNRCRTSN 323
           +R N    +NNR+  +N   +NN  R +N
Sbjct: 364 WRNNQPSTSNNRWHNNNGNNSNNHWRKNN 392


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 24.6 bits (51), Expect = 0.72
 Identities = 13/55 (23%), Positives = 24/55 (43%)
 Frame = +1

Query: 223 KPATTSEPTTHAKPTTDSEPATNAKPTTDAEPATYAKSTTNADSATNAESATDAE 387
           +P  T EP      TT+SEP   ++  T++      ++T   +S   ++     E
Sbjct: 394 EPVPTPEP--QPTQTTESEPTQASEQPTESSTTQKPQTTKTPESGNESDGVCTKE 446



 Score = 22.2 bits (45), Expect = 3.9
 Identities = 11/54 (20%), Positives = 23/54 (42%)
 Frame = +1

Query: 262 PTTDSEPATNAKPTTDAEPATYAKSTTNADSATNAESATDAESATNAESATDAE 423
           PT + +P      TT++EP   ++  T + +    ++    ES   ++     E
Sbjct: 397 PTPEPQPTQ----TTESEPTQASEQPTESSTTQKPQTTKTPESGNESDGVCTKE 446


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.306    0.114    0.304 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,300
Number of Sequences: 336
Number of extensions: 1267
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16969115
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)