Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0235
         (812 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual     69   1e-12
SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual    60   4e-10
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    27   2.4  
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy...    27   3.2  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    26   5.5  
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c...    26   7.3  
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom...    26   7.3  
SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein 3...    26   7.3  

>SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 68.5 bits (160), Expect = 1e-12
 Identities = 46/155 (29%), Positives = 65/155 (41%), Gaps = 1/155 (0%)
 Frame = +1

Query: 256 IPPVTRAYTTACVVTTLAVQLDLVSPFQLYFNPNLILRKYQLWRXXXXXXXXXXXXXXXX 435
           IPPVTR        TT+     L+SP  L  +  L++R+ Q W                 
Sbjct: 16  IPPVTRYILLGTAATTILTLCQLLSPSMLVLHYPLVVRQKQ-WYRLFTNYLYAGTGFDFI 74

Query: 436 XXVIFTYRYCRMLEEGSFRSRTADFVVMFIFGGLLMIICAFFVNL-LFLGQAFTIMIVYV 612
             + F Y+Y   LE   F      +++  +   LL+   +    L   L Q+    I Y 
Sbjct: 75  MNIYFFYQYSTYLENFVFARNAKKYIIYLVKVALLIDAFSLISGLGSALNQSLAAAIAYN 134

Query: 613 WSRRNVFVRMNFFGLMNFQAPYLPWVLLGFSVLLG 717
           WS  N F ++ F    + Q  YLP+VLLGFS L G
Sbjct: 135 WSLFNSFSKIQFLFGFHVQGKYLPYVLLGFSFLTG 169


>SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 60.1 bits (139), Expect = 4e-10
 Identities = 31/113 (27%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
 Frame = +1

Query: 448 FTYRYCRMLEEGSFRSRTADFVVMFIFGGLLMIICAFFVNLLFLGQAFTIMIVYVWSRRN 627
           F  R+  MLE  S   +T  F+   +     +++ ++F  + F    F+  ++Y+WS ++
Sbjct: 53  FLLRFMSMLERSSPPPQTQSFLKTVLIVWFSLLVTSYFSYMPFAASYFSFTMLYIWSWKH 112

Query: 628 VFVRMNFFGLMNFQAPYLPWVLLGFSVLLGMQFQLI*LDGN--RYIYFFLEEF 780
              R++  GL + +APY+PWV++    L    F L+ L      ++YFF+ +F
Sbjct: 113 PLYRISILGLFDVKAPYVPWVMVLLRWLRTGIFPLLDLISALIGHVYFFVTDF 165


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = +1

Query: 202 LYYLDTMAYQTLLQEYM----LIPPVTRAYTTACVVTTLAVQLDLVSPFQLYFN 351
           L Y  +  Y TLL+ +      I P+T+A   AC + ++    + +S F L+ N
Sbjct: 487 LSYQSSFDYDTLLRIFQKNGNFITPITQALLNACEIDSIYQSWEDISNFVLFDN 540


>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 492 IENSRFCCHVHIWRLINDYMCFLC*SIVFRASVYNH 599
           +E    CCH++   L   + CFLC + +   + Y H
Sbjct: 375 VERIDGCCHMNC--LCGTHFCFLCGAYLMEQNPYKH 408


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 756 VPIAIQLDQLKLHAEQN*ETKQNPGEVRCLEV 661
           VP+  QLD LK+   +N +T  + G  RCL V
Sbjct: 590 VPVHHQLDILKIAVSENYKTFASVGLDRCLVV 621


>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 367

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = -2

Query: 733 STEIACRAELRNQAEPRGGKVPGSSLIQRSSFSRKHSCVTIHT 605
           S +  C+   +    PR      S    +S  SRK SCVT  T
Sbjct: 83  SEDYLCKKVSKGPESPRVNSFHNSYSRNQSPISRKSSCVTCST 125


>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
           Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -3

Query: 678 VRCLEVH*SKEVHSHENIPA*PYIHNHDCKRLP 580
           +RC+ +  S+E+  H N+    YIH H+ K+LP
Sbjct: 349 IRCIHLQSSEELARHNNVFR--YIH-HNQKQLP 378


>SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +1

Query: 223 AYQTLLQEYMLIPPVTRAYTTACVVTTLAVQLDLVSPFQLYFNPN 357
           A Q  +   + +   T  +  AC      +++ L+ P  LYF+PN
Sbjct: 198 AVQAHVMNQVRLGRATLLHARACYQKIGDIRMYLIDPHDLYFSPN 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,400,662
Number of Sequences: 5004
Number of extensions: 73428
Number of successful extensions: 180
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)