Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0235
(812 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0709 - 35670153-35670350,35671206-35671259,35672444-356725... 163 1e-40
05_01_0594 - 5337804-5337976,5338282-5338436,5338591-5338745,533... 108 4e-24
04_01_0223 + 2813129-2814014,2815928-2816309,2816358-2816459,281... 32 0.47
12_02_0689 + 22160627-22160720,22161331-22161425,22161679-221618... 29 5.8
11_06_0032 + 19432305-19432510,19433390-19434326,19434880-194349... 28 7.7
05_05_0215 - 23352363-23352666,23353183-23353495,23353590-23353713 28 7.7
05_01_0294 - 2291175-2291223,2291591-2292039,2292143-2292211,229... 28 7.7
>03_06_0709 -
35670153-35670350,35671206-35671259,35672444-35672527,
35672688-35672902,35673959-35674058,35674178-35674276
Length = 249
Score = 163 bits (396), Expect = 1e-40
Identities = 81/204 (39%), Positives = 117/204 (57%), Gaps = 13/204 (6%)
Frame = +1
Query: 229 QTLLQEYMLIPPVTRAYTTACVVTTLAVQLDLVSPFQLYFNPNLILRKYQLWRXXXXXXX 408
Q + + Y +P +TR+Y TA VVTT+ L+++SP+ LY NP L+++ Y++WR
Sbjct: 3 QAVEEWYRQMPIITRSYLTAAVVTTVGCTLEIISPYHLYLNPKLVVQHYEIWRLVTNFLY 62
Query: 409 XXXXXXXXXXXVIFTYRYCRMLEEGSFRSRTADFVVMFIFG-----------GLLMIICA 555
+ F RYC++LEE SFR RTADF M +FG G++ I
Sbjct: 63 FRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLIGGMIPYISE 122
Query: 556 FFVNLLFLGQAFTIMIVYVWSRRNVFVRMNFFGLMNFQAPYLPWVLLGFSVLLGMQ--FQ 729
F +LFL + T M+VYVWS+ N F+ M+F GL F A YLPWVLLGFS+L+G
Sbjct: 123 TFARILFLSNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTWVD 182
Query: 730 LI*LDGNRYIYFFLEEFYRAKDGK 801
L+ + ++Y+FLE+ Y G+
Sbjct: 183 LLGMIAG-HVYYFLEDVYPRMTGR 205
>05_01_0594 -
5337804-5337976,5338282-5338436,5338591-5338745,
5338864-5338992,5339096-5339189,5339293-5339366,
5339716-5339851,5341546-5341562
Length = 310
Score = 108 bits (260), Expect = 4e-24
Identities = 61/190 (32%), Positives = 100/190 (52%), Gaps = 4/190 (2%)
Frame = +1
Query: 247 YMLIPPVTRAYTTACVVTTLAVQLDLVSPFQLYFNPNLILRKYQLWRXXXXXXXXXXXXX 426
Y +PP+++AY T C T+ QL +++P L + +K+Q+WR
Sbjct: 8 YNSLPPISKAYGTLCFFATVLCQLQILNPPFLALYYPFVFKKFQIWRLFTSFFFLGKFSI 67
Query: 427 XXXXXVIFTYRYCRMLEEGSFRSRTADFVVMFIFGGL-LMIICAF-FVNLLFLGQAFTIM 600
++ RY LE+G+F RTADF+ M IFG + L+ + A F+++ FLG M
Sbjct: 68 NFGIRLLMIARYGVQLEKGAFEKRTADFLWMMIFGAISLLALSAIPFLDIYFLGVPMVSM 127
Query: 601 IVYVWSRRNVFVRMNFFGLMNFQAPYLPWVLLGFSVLLGMQFQLI*LDG--NRYIYFFLE 774
++YVWSR +++ +GL+ ++ YLPW +LG V+ G + L L G + Y+FL
Sbjct: 128 LLYVWSREYPNSQISMYGLVQLRSFYLPWAMLGLDVIFGSEI-LPGLLGILVGHTYYFLS 186
Query: 775 EFYRAKDGKD 804
+ GK+
Sbjct: 187 VLHPLATGKN 196
>04_01_0223 +
2813129-2814014,2815928-2816309,2816358-2816459,
2816727-2817249
Length = 630
Score = 32.3 bits (70), Expect = 0.47
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +3
Query: 702 LSSARHAISVDLVGWQSVHLLFL 770
+SSA+H V+LVGW+ H +FL
Sbjct: 409 ISSAKHKNLVELVGWEKAHTIFL 431
>12_02_0689 +
22160627-22160720,22161331-22161425,22161679-22161822,
22162256-22162513,22162595-22162666,22162759-22162824,
22163212-22163346,22163562-22163697,22163807-22163983,
22164086-22164192,22164281-22164421,22164604-22164740,
22164823-22165076,22165158-22165300,22165423-22165581,
22166049-22166461,22167369-22167474
Length = 878
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = -2
Query: 730 TEIACRAELRNQAEPRGGKVPGSSLIQRSSFSRKHSCVTIHTQ 602
T A EL NQ + + GS+ I S SR HSC+++H Q
Sbjct: 489 TSTADVVELMNQGQKN--RAVGSTAINDRS-SRSHSCLSVHVQ 528
>11_06_0032 +
19432305-19432510,19433390-19434326,19434880-19434975,
19435518-19435654,19435888-19436056
Length = 514
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +3
Query: 663 LPGTLPPLGSAWFLSSARHAISVDLVGWQSVHLLFLGGVLPSQGWKRLL 809
LPG + PL + S + + +V W S ++ F ++P Q W L+
Sbjct: 206 LPGRMAPLMKFYVFMSLAYLLV--MVVWSSQYIRFWRDIMPIQNWITLI 252
>05_05_0215 - 23352363-23352666,23353183-23353495,23353590-23353713
Length = 246
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +3
Query: 687 GSAWFLSSARHAISVDLVGWQSVHLLFLGG 776
G + L AR A + GWQS H F GG
Sbjct: 5 GVLFLLFLARQASAAGYGGWQSAHATFYGG 34
>05_01_0294 -
2291175-2291223,2291591-2292039,2292143-2292211,
2292397-2292449,2292492-2294478
Length = 868
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +3
Query: 291 CCHNFGCST*FSITFSTILQSKFDTEKISTMETVNNIPV 407
CCH G STI S + E I ++T N IP+
Sbjct: 369 CCHGHGHGRSMRSNTSTISDSWIEQEIIPLLQTENEIPL 407
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,538,733
Number of Sequences: 37544
Number of extensions: 414819
Number of successful extensions: 915
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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