Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0235
         (812 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22174| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.6  
SB_30202| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  
SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)                   29   5.9  
SB_15464| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  
SB_8770| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.8  

>SB_22174| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 296

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +1

Query: 226 YQTLLQEYMLIPPVTRAYTTACVVTTLAVQLDLVSPFQLYFNPNLIL 366
           Y TL Q+ +   P T   +TA  +T L  QL     F +YF    IL
Sbjct: 104 YLTLAQKLLYAVPATPVESTASDITPLLTQLGGFLRFHVYFTTRRIL 150


>SB_30202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 266

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -2

Query: 784 GRTPPRKSKCTDCHPTRSTEIACRAELRNQAEPRGGKVPGSSLIQRSS 641
           G T    +   DC P R T I     +R +A  RGGK   +  + ++S
Sbjct: 74  GSTKAIPTTTNDCKPGRRTRIKPAVTVRPRASDRGGKQSANKPLSKTS 121


>SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2988

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 668 WKFINPKKFILTKTFLRDHTY 606
           W F NP+  + TK  + +HTY
Sbjct: 404 WNFANPRNIVSTKERIAEHTY 424


>SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)
          Length = 761

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = +1

Query: 508 FVVMFIFGGLLMIICAFFVNLLFLGQAFTIMIVYVWSRRNVFV 636
           F+ +F F  ++ +  AFFV ++F   AF + +V+V+    VFV
Sbjct: 704 FIFIFFFAFVIFVFNAFFVFVVF---AFFVFLVFVFFVSVVFV 743



 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +1

Query: 508 FVVMFIFGGLLMIICAFFVNLLFLGQAFTIMIVYVWSRRNVFV 636
           F V  +F   + ++  FFV+++F+   F + +VYV+    VFV
Sbjct: 720 FFVFVVFAFFVFLVFVFFVSVVFV---FFVFVVYVFFALVVFV 759


>SB_15464| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1042

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
 Frame = +1

Query: 508  FVVMF--IFGGLLMIICAFFVNLLFLGQAFTIMIVYVWS--RRNVFVRMNF---FGLMNF 666
            +V+M   IF  L  ++  FF+ ++  G  F I++  V S  R    +   F    G MN+
Sbjct: 796  YVIMLASIFVTLAKVLMLFFLFVMAFGVTFYILLENVESFDRLETSLMTTFVMTLGEMNY 855

Query: 667  QAPYLPWVLLGFSVLLGMQF 726
               ++PW  L ++  + + F
Sbjct: 856  GDTFMPWNKLHYATFINILF 875


>SB_8770| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1303

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 249  YANTTSHQGLHHSLCCHNFGCST 317
            Y +TTSH   HH+ C H    ST
Sbjct: 1142 YHHTTSHSAYHHTKCHHTTSHST 1164


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,471,194
Number of Sequences: 59808
Number of extensions: 517995
Number of successful extensions: 1344
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1343
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2263654701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)