Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0235
         (812 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-12|AAK29854.2|  237|Caenorhabditis elegans Hypothetical p...   211   4e-55
AF143152-1|AAD37863.1|  237|Caenorhabditis elegans putative NADH...   211   4e-55
Z78418-1|CAB01696.1|  245|Caenorhabditis elegans Hypothetical pr...    81   1e-15
Z81054-11|CAB02888.1|  430|Caenorhabditis elegans Hypothetical p...    30   1.7  
Z70683-7|CAA94593.1|  430|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AF125960-2|AAD14736.1|  478|Caenorhabditis elegans Hypothetical ...    29   3.0  
AF002196-3|AAP68957.1|  916|Caenorhabditis elegans Hypothetical ...    29   4.0  
AF002196-2|AAP68956.1|  915|Caenorhabditis elegans Hypothetical ...    29   4.0  
AF002196-1|AAP68955.1|  913|Caenorhabditis elegans Hypothetical ...    29   4.0  
U41534-7|AAB47599.3| 1743|Caenorhabditis elegans Hypothetical pr...    29   5.2  
Z92806-2|CAB07257.1|  303|Caenorhabditis elegans Hypothetical pr...    28   9.1  

>U00036-12|AAK29854.2|  237|Caenorhabditis elegans Hypothetical
           protein R151.6 protein.
          Length = 237

 Score =  211 bits (516), Expect = 4e-55
 Identities = 101/177 (57%), Positives = 123/177 (69%), Gaps = 1/177 (0%)
 Frame = +1

Query: 256 IPPVTRAYTTACVVTTLAVQLDLVSPFQLYFNPNLILRKYQLWRXXXXXXXXXXXXXXXX 435
           +PPVTR YT ACV+ T AV L+ V+PF LYFN  LI+RKYQ WR                
Sbjct: 11  MPPVTRFYTGACVLLTTAVHLEFVTPFHLYFNWELIIRKYQFWRLITSFCFFGSFGFSFL 70

Query: 436 XXVIFTYRYCRMLEEGSFRSRTADFVVMFIFGGLLMIICAFFVNLLFLGQAFTIMIVYVW 615
             +IFTYRYC MLEEGSFR R ADFV MF+FG +LMI+   FV +LFLGQAFTIM+VY+W
Sbjct: 71  FNMIFTYRYCMMLEEGSFRGRRADFVYMFLFGAVLMILSGIFVQILFLGQAFTIMLVYIW 130

Query: 616 SRRNVFVRMNFFGLMNFQAPYLPWVLLGFSVLLGMQFQLI*LD-GNRYIYFFLEEFY 783
           SRRN  ++MNFFG++ F APYLPWVLL FS+LLG    +  +     +IYFFLE+ +
Sbjct: 131 SRRNPMIQMNFFGVLTFTAPYLPWVLLLFSLLLGNNAVVDFMGIACGHIYFFLEDVF 187


>AF143152-1|AAD37863.1|  237|Caenorhabditis elegans putative NADH
           oxidoreductase complexI subunit protein.
          Length = 237

 Score =  211 bits (516), Expect = 4e-55
 Identities = 101/177 (57%), Positives = 123/177 (69%), Gaps = 1/177 (0%)
 Frame = +1

Query: 256 IPPVTRAYTTACVVTTLAVQLDLVSPFQLYFNPNLILRKYQLWRXXXXXXXXXXXXXXXX 435
           +PPVTR YT ACV+ T AV L+ V+PF LYFN  LI+RKYQ WR                
Sbjct: 11  MPPVTRFYTGACVLLTTAVHLEFVTPFHLYFNWELIIRKYQFWRLITSFCFFGSFGFSFL 70

Query: 436 XXVIFTYRYCRMLEEGSFRSRTADFVVMFIFGGLLMIICAFFVNLLFLGQAFTIMIVYVW 615
             +IFTYRYC MLEEGSFR R ADFV MF+FG +LMI+   FV +LFLGQAFTIM+VY+W
Sbjct: 71  FNMIFTYRYCMMLEEGSFRGRRADFVYMFLFGAVLMILSGIFVQILFLGQAFTIMLVYIW 130

Query: 616 SRRNVFVRMNFFGLMNFQAPYLPWVLLGFSVLLGMQFQLI*LD-GNRYIYFFLEEFY 783
           SRRN  ++MNFFG++ F APYLPWVLL FS+LLG    +  +     +IYFFLE+ +
Sbjct: 131 SRRNPMIQMNFFGVLTFTAPYLPWVLLLFSLLLGNNAVVDFMGIACGHIYFFLEDVF 187


>Z78418-1|CAB01696.1|  245|Caenorhabditis elegans Hypothetical
           protein F25D7.1 protein.
          Length = 245

 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 4/163 (2%)
 Frame = +1

Query: 238 LQEYML-IPPVTRAYTTACVVTTLAVQLDLVSPFQLYFNPNLILRKYQLWRXXXXXXXXX 414
           L+ ++L IP VTR +  A  +  L  +   ++   ++   +L++ K+Q WR         
Sbjct: 3   LENFLLGIPIVTRYWFLASTIIPLLGRFGFINVQWMFLQWDLVVNKFQFWRPLTALIYYP 62

Query: 415 XXXXXXXXXVI---FTYRYCRMLEEGSFRSRTADFVVMFIFGGLLMIICAFFVNLLFLGQ 585
                    ++   F Y Y + LE  ++R R+AD++ M IF           +++ FL +
Sbjct: 63  VTPQTGFHWLMMCYFLYNYSKALESETYRGRSADYLFMLIFNWFFCSGLCMALDIYFLLE 122

Query: 586 AFTIMIVYVWSRRNVFVRMNFFGLMNFQAPYLPWVLLGFSVLL 714
              I ++YVW + N    ++F+  M F A YLPWVL GF+ +L
Sbjct: 123 PMVISVLYVWCQVNKDTIVSFWFGMRFPARYLPWVLWGFNAVL 165


>Z81054-11|CAB02888.1|  430|Caenorhabditis elegans Hypothetical
           protein F01D4.8 protein.
          Length = 430

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 741 GWQSVHLLFLGGVLPSQGWKRLLK 812
           GW   HL ++GGV   + WK+L++
Sbjct: 389 GWVDTHLNYVGGVTAMECWKKLIQ 412


>Z70683-7|CAA94593.1|  430|Caenorhabditis elegans Hypothetical
           protein F01D4.8 protein.
          Length = 430

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 741 GWQSVHLLFLGGVLPSQGWKRLLK 812
           GW   HL ++GGV   + WK+L++
Sbjct: 389 GWVDTHLNYVGGVTAMECWKKLIQ 412


>AF125960-2|AAD14736.1|  478|Caenorhabditis elegans Hypothetical
           protein T12B3.2 protein.
          Length = 478

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +1

Query: 508 FVVMFIFGGLLMIICAFFVNLLFLGQAFTIMIVYVWSRRNVFV 636
           F+V    GG+L++ICA+ + ++   Q   +   + W    +F+
Sbjct: 144 FLVGLSIGGMLVVICAWIMEVILPQQRMVVRGFFNWGWTRIFL 186


>AF002196-3|AAP68957.1|  916|Caenorhabditis elegans Hypothetical
           protein C09D4.4c protein.
          Length = 916

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +1

Query: 454 YRYCRMLEEGSFRSRTADFVVMFIFGGLLMIICAFFVNLLFLGQAFTIMIVYVWS 618
           ++  R +E+ SFR  + DF   F++   L   C  F N+L +G     ++ Y+ S
Sbjct: 778 WKKSRSMEQLSFRD-SVDFASSFVYKTSLNNACGKFKNILLVGTPHDQLVPYMSS 831


>AF002196-2|AAP68956.1|  915|Caenorhabditis elegans Hypothetical
           protein C09D4.4b protein.
          Length = 915

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +1

Query: 454 YRYCRMLEEGSFRSRTADFVVMFIFGGLLMIICAFFVNLLFLGQAFTIMIVYVWS 618
           ++  R +E+ SFR  + DF   F++   L   C  F N+L +G     ++ Y+ S
Sbjct: 777 WKKSRSMEQLSFRD-SVDFASSFVYKTSLNNACGKFKNILLVGTPHDQLVPYMSS 830


>AF002196-1|AAP68955.1|  913|Caenorhabditis elegans Hypothetical
           protein C09D4.4a protein.
          Length = 913

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +1

Query: 454 YRYCRMLEEGSFRSRTADFVVMFIFGGLLMIICAFFVNLLFLGQAFTIMIVYVWS 618
           ++  R +E+ SFR  + DF   F++   L   C  F N+L +G     ++ Y+ S
Sbjct: 775 WKKSRSMEQLSFRD-SVDFASSFVYKTSLNNACGKFKNILLVGTPHDQLVPYMSS 828


>U41534-7|AAB47599.3| 1743|Caenorhabditis elegans Hypothetical
           protein C16A3.3 protein.
          Length = 1743

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = -1

Query: 545 IINKPPNMNMTTKSAVLDLKEPSSSILQYLYVNITLKKKLNPRFP 411
           I ++  N+ +T + ++L LK PS + +Q L + +T+   +   FP
Sbjct: 488 ICDERKNLIVTCRESILGLKSPSVNSVQELEIGVTVPCVIRKVFP 532


>Z92806-2|CAB07257.1|  303|Caenorhabditis elegans Hypothetical
           protein K10G4.2 protein.
          Length = 303

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +1

Query: 322 LVSPFQLYFNPNLILRKYQLW 384
           L+SPF L+F+ ++ +RK  +W
Sbjct: 99  LISPFMLFFHYHITIRKNSVW 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,587,695
Number of Sequences: 27780
Number of extensions: 403664
Number of successful extensions: 1096
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)