Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0235
         (812 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    25   0.83 
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   3.4  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   4.4  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 25.0 bits (52), Expect = 0.83
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 675 LPPLGSAWFLSSARHAISVDLVGWQSVHLLF 767
           LPP  +A+FLS ARH   +    +  V +LF
Sbjct: 761 LPPHVAAYFLSRARHHDDLYSQSYAEVGVLF 791


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 256 IPPVTRAYTTACVVTTLAVQLDLVSPFQLYFN 351
           + P T  Y T C     A+ +D VS F   F+
Sbjct: 339 VRPATVQYDTCCQGRATAIYIDKVSRFFFPFS 370


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
 Frame = -1

Query: 575 NNRLTKKAHIIINKPPNMNMTTKSAVLDLKEPSSSILQYLYVNITLKKKLNPRFP-KNRN 399
           NN  T   H+  +    + +     +L L  P  S L+Y    +  ++  +PR    NR+
Sbjct: 120 NNHYTSHQHLRTHLRGTLTVNVSVLLLSLASPDESSLKYEVEFLLQQQWYDPRLRYSNRS 179

Query: 398 ---VVNSLH 381
               +N++H
Sbjct: 180 QYEFLNAIH 188


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,586
Number of Sequences: 438
Number of extensions: 5165
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)