Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0235
         (812 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g04860.1 68417.m00708 Der1-like family protein / degradation ...   161   5e-40
At4g21810.1 68417.m03155 Der1-like family protein / degradation ...   154   8e-38
At4g29330.1 68417.m04191 Der1-like family protein / degradation ...   118   4e-27

>At4g04860.1 68417.m00708 Der1-like family protein / degradation in
           the ER-like family protein contains Pfam profile:
           PF04511 Der1-like family
          Length = 244

 Score =  161 bits (391), Expect = 5e-40
 Identities = 78/198 (39%), Positives = 116/198 (58%), Gaps = 13/198 (6%)
 Frame = +1

Query: 229 QTLLQEYMLIPPVTRAYTTACVVTTLAVQLDLVSPFQLYFNPNLILRKYQLWRXXXXXXX 408
           Q + + Y  +P +TR+Y TA V+TT+   LD++SP+ LY NP L++++YQ WR       
Sbjct: 3   QAVEEWYKQMPIITRSYLTAAVITTVGCSLDIISPYNLYLNPTLVVKQYQYWRLVTNFLY 62

Query: 409 XXXXXXXXXXXVIFTYRYCRMLEEGSFRSRTADFVVMFIFG-----------GLLMIICA 555
                      + F  RYC++LEE SFR +TADF+ M +FG           G++  + A
Sbjct: 63  FRKMDLDFMFHMFFLARYCKLLEENSFRGKTADFLYMLLFGASVLTGIVLIGGMIPYLSA 122

Query: 556 FFVNLLFLGQAFTIMIVYVWSRRNVFVRMNFFGLMNFQAPYLPWVLLGFSVLLGMQ--FQ 729
            F  ++FL  + T M+VYVWS++N ++ M+F GL  F A YLPWVLLGFS+L+G      
Sbjct: 123 SFAKIIFLSNSLTFMMVYVWSKQNPYIHMSFLGLFTFTAAYLPWVLLGFSILVGASAWVD 182

Query: 730 LI*LDGNRYIYFFLEEFY 783
           L+ +    + Y+FL E Y
Sbjct: 183 LLGMIAG-HAYYFLAEVY 199


>At4g21810.1 68417.m03155 Der1-like family protein / degradation in
           the ER-like family protein contains Pfam profile:
           PF04511 Der1-like family
          Length = 244

 Score =  154 bits (373), Expect = 8e-38
 Identities = 70/174 (40%), Positives = 104/174 (59%), Gaps = 11/174 (6%)
 Frame = +1

Query: 229 QTLLQEYMLIPPVTRAYTTACVVTTLAVQLDLVSPFQLYFNPNLILRKYQLWRXXXXXXX 408
           Q + + Y  +P +TR+Y TA VVTT+   L+++SP+ LY NP L++++YQ WR       
Sbjct: 3   QAVEEWYKQMPIITRSYLTAAVVTTVGCSLEIISPYNLYLNPTLVVKQYQFWRLVTNFLY 62

Query: 409 XXXXXXXXXXXVIFTYRYCRMLEEGSFRSRTADFVVMFIFG-----------GLLMIICA 555
                      + F  RYC++LEE SFR +T DF+ M +FG           G++  +  
Sbjct: 63  FRKMDLDFLFHMFFLARYCKLLEENSFRGKTTDFLYMLLFGATVLTGIVLIGGMIPYLSV 122

Query: 556 FFVNLLFLGQAFTIMIVYVWSRRNVFVRMNFFGLMNFQAPYLPWVLLGFSVLLG 717
            F  ++FL  + T M+VYVWS++N ++ M+F GL  F A YLPWVLLGFS+L+G
Sbjct: 123 SFSKIIFLSNSLTFMMVYVWSKQNPYIHMSFLGLFTFTAAYLPWVLLGFSILVG 176


>At4g29330.1 68417.m04191 Der1-like family protein / degradation in
           the ER-like family protein contains Pfam profile:
           PF04511 Der1-like family
          Length = 266

 Score =  118 bits (285), Expect = 4e-27
 Identities = 62/190 (32%), Positives = 99/190 (52%), Gaps = 4/190 (2%)
 Frame = +1

Query: 247 YMLIPPVTRAYTTACVVTTLAVQLDLVSPFQLYFNPNLILRKYQLWRXXXXXXXXXXXXX 426
           Y  +PP+T+AY T C  TT+A QL LV+P  +   P L+L+++Q+WR             
Sbjct: 8   YNSLPPITKAYGTLCFFTTVATQLGLVAPVHIALIPELVLKQFQIWRLITNLFFLGGFSI 67

Query: 427 XXXXXVIFTYRYCRMLEEGSFRSRTADFVVMFIFGGLLMIICAF--FVNLLFLGQAFTIM 600
                ++   RY   LE+G F  RTADF+ M IFG   +++ +   F    FLG +   M
Sbjct: 68  NFGIRLLMIARYGVQLEKGPFERRTADFLWMMIFGSFTLLVLSVIPFFWTPFLGVSLVFM 127

Query: 601 IVYVWSRRNVFVRMNFFGLMNFQAPYLPWVLLGFSVLLGMQF--QLI*LDGNRYIYFFLE 774
           ++Y+WSR      ++ +GL+  +A YLPW +L   V+ G      L+ +    ++Y+FL 
Sbjct: 128 LLYLWSREFPNANISLYGLVTLKAFYLPWAMLALDVIFGSPIMPDLLGIIAG-HLYYFLT 186

Query: 775 EFYRAKDGKD 804
             +    GK+
Sbjct: 187 VLHPLATGKN 196


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,297,487
Number of Sequences: 28952
Number of extensions: 363849
Number of successful extensions: 897
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1853336000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)