Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0233
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    26   4.7  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   4.7  
SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   8.3  

>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 362 FLILCFIAGFFLTLWDVNNANKTF*NSFFFKLGS 463
           F+I  F    F T W  +N N  +   F F++G+
Sbjct: 308 FVITAFSKNIFRTKWLRHNLNPVYNEKFLFEVGA 341


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -3

Query: 375 HKIRNS*CSGSTNARARR*YRASQNLQLWRYQFFGFGCGFLT 250
           H   N+  SGS   RAR+  R   N   W  + FG   G+ T
Sbjct: 230 HSASNAANSGSNTIRARQTTRTRSNTLPWSPRVFGPTLGYNT 271


>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 310 FPKFTTLEVPIFWFRMRFPNHP 245
           F KF T++ PI+ F   F  HP
Sbjct: 191 FTKFVTIDFPIYVFSSLFLYHP 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,919,181
Number of Sequences: 5004
Number of extensions: 60297
Number of successful extensions: 127
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)