Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0233
         (722 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50330| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-17)                 28   8.8  
SB_7051| Best HMM Match : RVT_1 (HMM E-Value=0.064)                    28   8.8  
SB_56940| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_50330| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-17)
          Length = 452

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -2

Query: 514 KTDDSTNDTFDDGTEKNRS*FKKKTILKRFISIIYVP*C 398
           +T++ TN+  ++ T K R    +K I K   S+IY+  C
Sbjct: 316 RTNEQTNERTNERTNKQRDNKNEKKINKTTTSVIYLSLC 354


>SB_7051| Best HMM Match : RVT_1 (HMM E-Value=0.064)
          Length = 756

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +2

Query: 209 SLIDLVKIYNISWVVRKPHPKPKNWYLQSCKFWEARYQRRARAF 340
           ++ D +  +  S VVR  HP  K W     KFW A+ Q+    F
Sbjct: 286 TITDALDRFCPSRVVRS-HPSDKPWINNKIKFWIAKRQKMLAKF 328


>SB_56940| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1981

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 65   KNSYRL*VSPGLEALNRGVNAPPIV*PPQ*TVWN 166
            +N  R+ VSP L A+ R  +   ++ PP+   WN
Sbjct: 1448 ENDIRIKVSPELSAIQRSSSRGQVLNPPESNKWN 1481


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,817,745
Number of Sequences: 59808
Number of extensions: 418962
Number of successful extensions: 713
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)