Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0233
         (722 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    26   1.4  
DQ370045-1|ABD18606.1|  285|Anopheles gambiae putative TIL domai...    23   9.6  
AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript...    23   9.6  

>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
           channel alpha subunitprotein.
          Length = 2139

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 287 LQSCKFWEARYQRRARAFVDPEHQLF-LILCFIAGFFL 397
           L +  +WE  YQ   R+   P H LF +++ F+  F+L
Sbjct: 382 LMTQDYWENLYQLVLRS-AGPWHMLFFIVIIFLGSFYL 418


>DQ370045-1|ABD18606.1|  285|Anopheles gambiae putative TIL domain
           protein protein.
          Length = 285

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 133 NSLTSTINSMESCRMSYLIACSCDRFSNR 219
           N +T +  S E CR S    C C R  +R
Sbjct: 223 NQITCSGISTEVCRRSCYCGCQCRRGYDR 251


>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1022

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -2

Query: 196 NRLLNSSSGRIPYCLLWRSNYWW-GVNASIQR 104
           ++  +++  R+     WR  YWW  V A ++R
Sbjct: 258 DKACDATMSRLKKTCRWRGVYWWTSVIADLRR 289


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 724,664
Number of Sequences: 2352
Number of extensions: 14431
Number of successful extensions: 68
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 73597131
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)