Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0233
         (722 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g20970.1 68417.m03036 basic helix-loop-helix (bHLH) family pr...    30   1.4  
At4g32300.1 68417.m04596 lectin protein kinase family protein co...    28   5.5  
At5g35320.1 68418.m04186 expressed protein                             28   7.2  

>At4g20970.1 68417.m03036 basic helix-loop-helix (bHLH) family
           protein 
          Length = 190

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 243 DILYIFTKSIRETITRTGY*IAHPAGFHTVYC 148
           +I+ + T+ +   IT  GY I   A FHT++C
Sbjct: 134 EIIRVLTEELGAEITHAGYSIVDDAVFHTLHC 165


>At4g32300.1 68417.m04596 lectin protein kinase family protein
           contains Pfam domains, PF01453: Lectin (probable mannose
           binding) and PF00069: Protein kinase domain
          Length = 821

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = -3

Query: 270 FGCGFLTTQDILYIFTKSI 214
           FG GF+TTQD + +FT SI
Sbjct: 55  FGFGFVTTQDSVTLFTLSI 73


>At5g35320.1 68418.m04186 expressed protein
          Length = 225

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 340 ERAGAALIPRFPKFTTLEVPIFWFR 266
           ++A   +IP+ P+ +T   PI WFR
Sbjct: 201 QQAQNCMIPQLPQVSTTPTPITWFR 225


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,759,243
Number of Sequences: 28952
Number of extensions: 300948
Number of successful extensions: 573
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)