Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0232
         (475 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0444 - 33979319-33980044                                         27   5.8  
03_05_0488 - 24847076-24847220,24847823-24847872,24848139-248482...    27   5.8  

>03_06_0444 - 33979319-33980044
          Length = 241

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 23/82 (28%), Positives = 35/82 (42%)
 Frame = +1

Query: 196 CRRSSPASPAITHFV*PCAIRRITHFV*HASTILVPIIFIPRAYICKSILKE*TPKKKVC 375
           C    P  P  T      A+R IT  +  A   L+P +       C   +KE     +V 
Sbjct: 142 CYSLPPELPKPTISPPEAAVRPITLPIGTAKPTLLPRVK-EEGESCGGRVKEEASSCEVQ 200

Query: 376 VSAPTHDWSLLDIKKKKKNSRG 441
           V AP   W+++  K+KK++  G
Sbjct: 201 VLAPEPMWTMISGKRKKRSGCG 222


>03_05_0488 - 24847076-24847220,24847823-24847872,24848139-24848278,
            24848358-24848493,24848584-24848683,24848837-24848949,
            24849034-24849132,24849227-24849311,24849799-24850037,
            24850202-24850372,24850544-24850784,24850899-24851172,
            24851481-24851660,24852170-24852251,24852336-24852437,
            24853315-24853384,24853725-24853824,24853931-24854025,
            24854105-24854184,24854361-24854439,24854603-24854663,
            24855570-24855984
          Length = 1018

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -3

Query: 269  CVMRLIAHGHTKCVIAGDAGL 207
            CV   +AH H K V A D GL
Sbjct: 959  CVCETVAHSHAKSVQANDIGL 979


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,769,574
Number of Sequences: 37544
Number of extensions: 240845
Number of successful extensions: 504
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)